Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 15675098

GI number: 15675098

Start: 916003

End: 916683

Strand: Direct

Name: radC [C]

Synonym: SPy_1118

Alternate gene names: 15675098

Gene position: 916003-916683 (Clockwise)

Preceding gene: 15675097

Following gene: 15675105

Centisome position: 49.45

GC content: 32.16

Gene sequence:

>681_bases
ATGTATTCTATAAAATGTGATGATAATAAAGCCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACAGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Upstream 100 bases:

>100_bases
TAAAGATAATATTCAAAAAAGACAAGCTATTCAAAAAAAACAAGTTTCCTAAAAGGAACTTGTTTTTTTGTCGAATAAAA
AGATGGAGGTAATATGATAA

Downstream 100 bases:

>100_bases
GTCAGAAGTCATTGACGAATAAGCGGAACAATTGTAAATCTTCATCTCGAACACCTTGGAGAAGTTCAGGATGCCACTGA
ACACCTAAAAAAGGAATGGC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Sequences:

>Translated_226_residues
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF
>Mature_226_residues
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=222, Percent_Identity=33.7837837837838, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI2367100, Length=111, Percent_Identity=40.5405405405405, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=34.7517730496454, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788997, Length=126, Percent_Identity=32.5396825396825, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1079_STRP8 (P65963)

Other databases:

- EMBL:   AE009949
- RefSeq:   NP_607203.1
- ProteinModelPortal:   P65963
- SMR:   P65963
- EnsemblBacteria:   EBSTRT00000030757
- GeneID:   994455
- GenomeReviews:   AE009949_GR
- KEGG:   spm:spyM18_1079
- GeneTree:   EBGT00050000027779
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   SPYO186103:SPYM18_1079-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25743; Mature: 25743

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLAD
CCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FKKMSLQELQHLAGIGKVKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
KKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHPSGN
CCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCEEEEEEECCCCC
IEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLAD
CCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FKKMSLQELQHLAGIGKVKAIEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
KKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILYYACKNMATSLIVIHNHPSGN
CCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCEEEEEEECCCCC
IEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11917108