| Definition | Streptococcus pyogenes M1 GAS chromosome, complete genome. |
|---|---|
| Accession | NC_002737 |
| Length | 1,852,441 |
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The map label for this gene is yhdW [H]
Identifier: 15674874
GI number: 15674874
Start: 691351
End: 693084
Strand: Direct
Name: yhdW [H]
Synonym: SPy_0839
Alternate gene names: 15674874
Gene position: 691351-693084 (Clockwise)
Preceding gene: 15674873
Following gene: 15674875
Centisome position: 37.32
GC content: 31.49
Gene sequence:
>1734_bases ATGACATTTTTATCTGATTTGATATCATTAATGACAAAAATCAGATTATCTTGGGTAATAAAGGCGGGTATTTTTCAATT ATTATTTGTAACGATTGCTAATATTGTCTTATCAGAATTTTTCTATTTTATATTAGACGTTACTGGTCAATATCATTTAG ATAAAGACAATGTTGTGACTTTTTTAAAAAATCCTATAGCACTTGCTTTATTAGGTGCCTATTTATTTTTATTAGCTGCT TTTATTCACCTTGAGTTTTTTGCTCTATATCGAATTATTGCGGATCAAGAAATTAGTTTCTATCTTTTTAGAAAACAGTT TTCTTATTACCTAAGGGGGCTTTGGAAAACATTTTCTGGTTACCAATTATTACTTTTTTTGCTTTATATCCTATTGACTA TTCCAGTCTTACATATTGGTTTATCTTCTGTGATTACTCAAAAGCTTTATCTTCCAGAATTTATTGTTGGGGAATTATCA AAGATAACTAGCACAAAGTACTTGCTTTATGGCAGTCTTATTCTTGTGTTTTACCTTAACCTAAGATTAGTATATTTTTT ACCATTGATAGCAATCAACCATCGTACGGTTGCTCAAGCATGGAGAGAGAGTTGGCAAAAGACTAAAAAGAAACATGTAT TGTTATGGATGAAACTTTTTGCAATCAATGGTCTTACGATTGTAGTCTTATCGCTAGCTATTTCCATGATTCTTATTTTT GTTGATATGTTTAATCCTAAGGGGAATAATATTATTGTTCAGCTGGGAGCTTTGACCTTTACATGGGAACTCATTTTTTT TACTACTATTTTTTTTAAACTCTGTTCAGCAATGATTTTAAAAGAGGCAATTGAACCACAAAAGCAATATGATGAGCCAA GAAGAAGTAATAAGGCATATGTTGTAATCTTTATCGTGGTTACAGTAGGTTTTGCTTATCAATCTCTTGAACGTTTAACT TTTTTTGACACATCTCACTCTAAGACAGTTATCGCGCATAGAGGACTTGTATCAGCAGGTGTAGAAAATTCTCTGGAAGC CCTTGAAGGTGCTAAGAAAGCAGGAAGTGATTATGTAGAACTGGATCTAATCTTGACTAAGGATAATCACTTTGTGGTGT CTCATGATAATCGATTGAAGCGTTTAGCTGGAGTAAATAAGACGATTCGCAACTTAACCTTAAAAGAAGTTGAACATCTA ACGAGTCATCAAGGACATTTTTCAGGGCGTTTTGTTTCTTTTGACACTTTTTATCAAAAGGCTAAGAAGTTGAATATGCC ATTACTTATTGAACTCAAGCCAATTGGTACAGAACCTGGAAATTATGTCGATTTGTTTTTAGAAACTTATCATCGACTTG GTATAAGCAAAGATAATAAAGTCATGTCTTTAGATTTAGAAGTAATAGAAGCTATCAAGAAAAAAAATCCATCAATTACG ACTGGTTATATCATACCAATTCAATTTGGATTTTTTGGAGATGAATTTGTTGATTTCTATGTCATTGAAGACTTTTCTTA TCGGTCTTATTTGTCGTCCCAAGCTTTTTGGAATAATAAAGAAATTTACGTTTGGACTATTAATGATCCCAAGCGCATAG AGCATTATCTCCTAAAGCCTATTCAGGGAATTATTACAGACCAACCAGCTTTAACTAATCAATTGATTAAAGACTTAAAA CAAGATAATTCTTATTTTAGTCGATTAGTCAGAATTATTAGTAGTCTTTATTAA
Upstream 100 bases:
>100_bases GATAGCGTATAAGTGATACATCTCTTATTTCTAGCTGAACTTCGGTTCGGCTAGGAAGTTGTCAGGCAATGAGTTGTTTA AAATAAAGGAGATTAGTTCA
Downstream 100 bases:
>100_bases AGGTTTAAGGAAAGTGTCAAGAAAAAAACTTGACACTTTCTTTAAACTGAGTTATACTGTTTAACATAGGAATTTAGCGT AGCTGTATTTCTTATACATT
Product: putative glycerophosphodiester phosphodiesterase
Products: NA
Alternate protein names: Glycerophosphodiester phosphodiesterase [H]
Number of amino acids: Translated: 577; Mature: 576
Protein sequence:
>577_residues MTFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVTFLKNPIALALLGAYLFLLAA FIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSGYQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELS KITSTKYLLYGSLILVFYLNLRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAYVVIFIVVTVGFAYQSLERLT FFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVELDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHL TSHQGHFSGRFVSFDTFYQKAKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKPIQGIITDQPALTNQLIKDLK QDNSYFSRLVRIISSLY
Sequences:
>Translated_577_residues MTFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVTFLKNPIALALLGAYLFLLAA FIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSGYQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELS KITSTKYLLYGSLILVFYLNLRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAYVVIFIVVTVGFAYQSLERLT FFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVELDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHL TSHQGHFSGRFVSFDTFYQKAKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKPIQGIITDQPALTNQLIKDLK QDNSYFSRLVRIISSLY >Mature_576_residues TFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVTFLKNPIALALLGAYLFLLAAF IHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSGYQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELSK ITSTKYLLYGSLILVFYLNLRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIFV DMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAYVVIFIVVTVGFAYQSLERLTF FDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVELDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHLT SHQGHFSGRFVSFDTFYQKAKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSITT GYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKPIQGIITDQPALTNQLIKDLKQ DNSYFSRLVRIISSLY
Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]
COG id: COG4781
COG function: function code C; Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GDPD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004129 - InterPro: IPR017946 [H]
Pfam domain/function: PF03009 GDPD [H]
EC number: =3.1.4.46 [H]
Molecular weight: Translated: 66748; Mature: 66617
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHH FLKNPIALALLGAYLFLLAAFIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSG HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH YQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELSKITSTKYLLYGSLILVFYLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAY HHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCE VVIFIVVTVGFAYQSLERLTFFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVE EEEEHHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCHHHHHHHHHHHHHCCCCEEE LDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHLTSHQGHFSGRFVSFDTFYQK EEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH AKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCEE TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKP EEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH IQGIITDQPALTNQLIKDLKQDNSYFSRLVRIISSLY HHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCC >Mature Secondary Structure TFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHH FLKNPIALALLGAYLFLLAAFIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSG HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH YQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELSKITSTKYLLYGSLILVFYLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAY HHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCE VVIFIVVTVGFAYQSLERLTFFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVE EEEEHHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCHHHHHHHHHHHHHCCCCEEE LDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHLTSHQGHFSGRFVSFDTFYQK EEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH AKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCEE TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKP EEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH IQGIITDQPALTNQLIKDLKQDNSYFSRLVRIISSLY HHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]