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The map label for this gene is agaD [H]

Identifier: 15674702

GI number: 15674702

Start: 506027

End: 506848

Strand: Reverse

Name: agaD [H]

Synonym: SPy_0629

Alternate gene names: 15674702

Gene position: 506848-506027 (Counterclockwise)

Preceding gene: 15674703

Following gene: 15674701

Centisome position: 27.36

GC content: 39.29

Gene sequence:

>822_bases
ATGACTGGATCTAATAAATTAACCAAGAAAGATTACCTCAAAACAGCTCTGAGAGCTTTCTTCCTACAAAATGGGTTTAA
TTACAATAATTACCAAGGTATCGGATACGCCAATGTCATCTATCCTGCCTTGAAAAAACATTTTGGCAATGATAAAAAGG
GCTTATATCAAGCTTTAGAAGATAACTGTGAGTTTTACAATACTAATCCTCACTTCCTTCCTTTCATCACCAGTCTGCAC
TTGGTCATGTTAGAAAATAATCGCCCTGAAGAAGAAACCCGAAACATCAAAATGGCACTTATGGGGCCTTTAGCTGGTAT
CGGTGACTCCTTATCACAATTTTGCTTGGCGCCACTCTTTTCAACGATTGCAGCTTCCTTAGCTAGTGATGGTCTGGTTT
TGGGACCAATCCTCTTCTTCCTAGCCATGAATATTATCCTAACCGCTATTAAAATTGGTTCTGGACTCTATGGCTACAAG
GTCGGCACAAGCTTTATTGATAAATTAAGTGAACAAATGGCGGTTGTGTCGCGCATGGCAAATATTGTCGGCGTTACCGT
TATCGCTGGACTAGCAGCTACTTCTGTTAAAATTACTGTTCCCATTACTTTTGCCGCTGGCAAGGTGGATGCGGCCAATA
CAGCACAAAAATTTGTGACTATTCAAGGAATGCTTGATAAGATTGCCCCTGCACTTTTACCAGCTCTCTTTACCTTACTC
ATGTATTACCTTATTAAAAACAAAAAATGGACAACCTACAAATTGGTCATTTTAACTGTTATCATTGGTGTTATTGGCAG
TTGGTTGGGTATTTTAGCTTAA

Upstream 100 bases:

>100_bases
ACCATTGGTATCGCCATTATTGGTATCATTTTCGCCTTGAATGAATTTTACAACAAACCTAAACAAGTCGATGCAACAAC
TGTCCAAGGAGGCCAACAAG

Downstream 100 bases:

>100_bases
TGGTTCATAGAGACCTGTTATGAGCATAGGGAAATAGTTCCTAAGCACATGATGAGGTCTCTTTTCTTTTGGAAAGGAAA
TGTCCTATGTTTTTTGCCTT

Product: PTS system N-acetylgalactosamine-specific transporter subunit IID

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTGSNKLTKKDYLKTALRAFFLQNGFNYNNYQGIGYANVIYPALKKHFGNDKKGLYQALEDNCEFYNTNPHFLPFITSLH
LVMLENNRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLFSTIAASLASDGLVLGPILFFLAMNIILTAIKIGSGLYGYK
VGTSFIDKLSEQMAVVSRMANIVGVTVIAGLAATSVKITVPITFAAGKVDAANTAQKFVTIQGMLDKIAPALLPALFTLL
MYYLIKNKKWTTYKLVILTVIIGVIGSWLGILA

Sequences:

>Translated_273_residues
MTGSNKLTKKDYLKTALRAFFLQNGFNYNNYQGIGYANVIYPALKKHFGNDKKGLYQALEDNCEFYNTNPHFLPFITSLH
LVMLENNRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLFSTIAASLASDGLVLGPILFFLAMNIILTAIKIGSGLYGYK
VGTSFIDKLSEQMAVVSRMANIVGVTVIAGLAATSVKITVPITFAAGKVDAANTAQKFVTIQGMLDKIAPALLPALFTLL
MYYLIKNKKWTTYKLVILTVIIGVIGSWLGILA
>Mature_272_residues
TGSNKLTKKDYLKTALRAFFLQNGFNYNNYQGIGYANVIYPALKKHFGNDKKGLYQALEDNCEFYNTNPHFLPFITSLHL
VMLENNRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLFSTIAASLASDGLVLGPILFFLAMNIILTAIKIGSGLYGYKV
GTSFIDKLSEQMAVVSRMANIVGVTVIAGLAATSVKITVPITFAAGKVDAANTAQKFVTIQGMLDKIAPALLPALFTLLM
YYLIKNKKWTTYKLVILTVIIGVIGSWLGILA

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=268, Percent_Identity=38.0597014925373, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1788122, Length=285, Percent_Identity=27.719298245614, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 29779; Mature: 29647

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSNKLTKKDYLKTALRAFFLQNGFNYNNYQGIGYANVIYPALKKHFGNDKKGLYQALE
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
DNCEFYNTNPHFLPFITSLHLVMLENNRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLF
CCCCEECCCCCHHHHHHHHHHEEECCCCCHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHH
STIAASLASDGLVLGPILFFLAMNIILTAIKIGSGLYGYKVGTSFIDKLSEQMAVVSRMA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NIVGVTVIAGLAATSVKITVPITFAAGKVDAANTAQKFVTIQGMLDKIAPALLPALFTLL
HHHHHHHHHHHHHCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYYLIKNKKWTTYKLVILTVIIGVIGSWLGILA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGSNKLTKKDYLKTALRAFFLQNGFNYNNYQGIGYANVIYPALKKHFGNDKKGLYQALE
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
DNCEFYNTNPHFLPFITSLHLVMLENNRPEEETRNIKMALMGPLAGIGDSLSQFCLAPLF
CCCCEECCCCCHHHHHHHHHHEEECCCCCHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHH
STIAASLASDGLVLGPILFFLAMNIILTAIKIGSGLYGYKVGTSFIDKLSEQMAVVSRMA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NIVGVTVIAGLAATSVKITVPITFAAGKVDAANTAQKFVTIQGMLDKIAPALLPALFTLL
HHHHHHHHHHHHHCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYYLIKNKKWTTYKLVILTVIIGVIGSWLGILA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]