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The map label for this gene is licT [H]

Identifier: 15674661

GI number: 15674661

Start: 461983

End: 462825

Strand: Direct

Name: licT [H]

Synonym: SPy_0571

Alternate gene names: 15674661

Gene position: 461983-462825 (Clockwise)

Preceding gene: 15674659

Following gene: 15674662

Centisome position: 24.94

GC content: 35.59

Gene sequence:

>843_bases
ATGTTGATTAAACGCGTTTTAAACCATAATGCGGCGATTTCGACCAACCATCAAGGATTAGATATTTTATTGATGGGAAA
AGGGATTACCTTTGGAAAAAAAGTTGGAGATAGTATTGAGCTTAATGCTATCGAAACATCATTTGTTTTAAAAAATAGTG
ACAATATGAATCGCTTCACAGAGTTATTTATTACGGTGCCACAAGAAGTTGTTGCTTGCTCAGAGAGAATTATCAATCTA
GGTAAAATTAAATTAGGCAAAACCTTAGATGAAATTCTCTATATTAATTTAACGGATCATATTCACTCTGCTATTGAAAG
GCATGAGCAAGGAATGTTGATTCATAACCCACTACGGTGGGAAATTCAACGCTATTATCCTGATGAATATAGTCTAGGGG
TAAAAGCCTTAGAGCTAATTGAGCGTAATCTAGGAGTCACTCTAGCTATTGATGAAGCAGCTTTTATTGCCATGCATTTT
GTCAATGCTAGTTTGGACACTCCTTTTAAGGAGCCACATCGCCTGACGGAGATTGTTTCTTATATTGAGCAAAAAATCAA
AACAGACTTCAAAACAGAATTGGATGACACATCCATCGATTATTACCGCTTTATGACCCATATTAAATTATTTGCTCAAC
GTGTGTTATCACAGATGTCTTACGATGATGATGATGCGGAACTGCTTTTAGTGGTGAAAACGAAATACCCTAAAGAATAT
CGGTGCGTCTTAGATATTAGTGAGGAGATAAAAAAGCGGTACAACTACCACCTTAATTCAAGCGAACTTTTGTATTTGAC
GGTTCATGTTAAACGTTTAGTGAAACATTTAAAGGAGACTTAA

Upstream 100 bases:

>100_bases
TTATCACAGTTTTGTGAGCAGGGACCTATTTGAAAAGTGCTTTTTAGCGAGCTTTTGGATAGGTCATTTTTTATTGTGAT
ACTAAAGGACTAGGACTTTT

Downstream 100 bases:

>100_bases
TATGACGTATCAAGAAACTGCCAAGGCTATTTTAGCGGCGGTTGGTGGCAAAACAAATATTCAACGTGTGACACACTGTG
TAACACGTCTACGCTTAGTA

Product: putative transcription antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MLIKRVLNHNAAISTNHQGLDILLMGKGITFGKKVGDSIELNAIETSFVLKNSDNMNRFTELFITVPQEVVACSERIINL
GKIKLGKTLDEILYINLTDHIHSAIERHEQGMLIHNPLRWEIQRYYPDEYSLGVKALELIERNLGVTLAIDEAAFIAMHF
VNASLDTPFKEPHRLTEIVSYIEQKIKTDFKTELDDTSIDYYRFMTHIKLFAQRVLSQMSYDDDDAELLLVVKTKYPKEY
RCVLDISEEIKKRYNYHLNSSELLYLTVHVKRLVKHLKET

Sequences:

>Translated_280_residues
MLIKRVLNHNAAISTNHQGLDILLMGKGITFGKKVGDSIELNAIETSFVLKNSDNMNRFTELFITVPQEVVACSERIINL
GKIKLGKTLDEILYINLTDHIHSAIERHEQGMLIHNPLRWEIQRYYPDEYSLGVKALELIERNLGVTLAIDEAAFIAMHF
VNASLDTPFKEPHRLTEIVSYIEQKIKTDFKTELDDTSIDYYRFMTHIKLFAQRVLSQMSYDDDDAELLLVVKTKYPKEY
RCVLDISEEIKKRYNYHLNSSELLYLTVHVKRLVKHLKET
>Mature_280_residues
MLIKRVLNHNAAISTNHQGLDILLMGKGITFGKKVGDSIELNAIETSFVLKNSDNMNRFTELFITVPQEVVACSERIINL
GKIKLGKTLDEILYINLTDHIHSAIERHEQGMLIHNPLRWEIQRYYPDEYSLGVKALELIERNLGVTLAIDEAAFIAMHF
VNASLDTPFKEPHRLTEIVSYIEQKIKTDFKTELDDTSIDYYRFMTHIKLFAQRVLSQMSYDDDDAELLLVVKTKYPKEY
RCVLDISEEIKKRYNYHLNSSELLYLTVHVKRLVKHLKET

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=36.7272727272727, Blast_Score=201, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32529; Mature: 32529

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00654 ANTITERMINATORS_BGLG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKRVLNHNAAISTNHQGLDILLMGKGITFGKKVGDSIELNAIETSFVLKNSDNMNRFT
CHHHHHHCCCCEEECCCCCEEEEEEECCCCCHHHCCCCEEEEEEEEEEEEECCCCHHHHH
ELFITVPQEVVACSERIINLGKIKLGKTLDEILYINLTDHIHSAIERHEQGMLIHNPLRW
HHHHCCCHHHHHHHHHHHHCCCEECCCCHHHEEEEEEHHHHHHHHHHHHCCCEEECCCEE
EIQRYYPDEYSLGVKALELIERNLGVTLAIDEAAFIAMHFVNASLDTPFKEPHRLTEIVS
EHHEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
YIEQKIKTDFKTELDDTSIDYYRFMTHIKLFAQRVLSQMSYDDDDAELLLVVKTKYPKEY
HHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
RCVLDISEEIKKRYNYHLNSSELLYLTVHVKRLVKHLKET
EEEEEHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MLIKRVLNHNAAISTNHQGLDILLMGKGITFGKKVGDSIELNAIETSFVLKNSDNMNRFT
CHHHHHHCCCCEEECCCCCEEEEEEECCCCCHHHCCCCEEEEEEEEEEEEECCCCHHHHH
ELFITVPQEVVACSERIINLGKIKLGKTLDEILYINLTDHIHSAIERHEQGMLIHNPLRW
HHHHCCCHHHHHHHHHHHHCCCEECCCCHHHEEEEEEHHHHHHHHHHHHCCCEEECCCEE
EIQRYYPDEYSLGVKALELIERNLGVTLAIDEAAFIAMHFVNASLDTPFKEPHRLTEIVS
EHHEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
YIEQKIKTDFKTELDDTSIDYYRFMTHIKLFAQRVLSQMSYDDDDAELLLVVKTKYPKEY
HHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
RCVLDISEEIKKRYNYHLNSSELLYLTVHVKRLVKHLKET
EEEEEHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]