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The map label for this gene is jag [H]

Identifier: 15674430

GI number: 15674430

Start: 215351

End: 216265

Strand: Direct

Name: jag [H]

Synonym: SPy_0248

Alternate gene names: 15674430

Gene position: 215351-216265 (Clockwise)

Preceding gene: 15674429

Following gene: 15674431

Centisome position: 11.63

GC content: 41.31

Gene sequence:

>915_bases
ATGGTATTATTTACAGGAAAAACAGTCGAAGAAGCTATCGAAACAGGACTTCAAGAGTTAGGGTTATCACGCCTTAAAGC
GCATATCAAAGTCATTTCAAAAGAGAAAAAAGGTTTCCTCGGGTTTGGTAAAAAGCCAGCCCAAGTTGATATCGAAGGTA
TCAGCGACAAGACGGTTTATAAGGCTGATAAAAAAGCCACTCGAGGTGTTCCAGAGGATATTAATCGTCAAAATACTCCC
GCGGTCAATTCTGCTGATGTAGAACCTGAAGAAATAAAAGCCACTCAAAGGTTAGAAGCAGAAGATACCAAAGTGGTTCC
TCTCATGTCTGAAGATAGTCCAGCGCAAACCCCTTCTAATCTTGCTGAGACAGTCACTGAAACAAAAGCACAACAACCGT
CAATCCCAGTCGAAGAATCAGAAGTGCCCCAAGATGCTGGTAATGATGGTTTCAGCAAAGATATTGAAAAAGCTGCTCAG
GAAGTGTCCGATTATGTGACTAAAATTATCTATGAAATGGATATCGAAGCTACCGTTGAAACCAGCAACAATCGTCGCCA
AATCAATTTGCAGATTGAAACGCCAGAGGCGGGACGTGTGATTGGTTACCATGGTAAGGTCTTGAAATCCTTGCAGTTGT
TAGCTCAAAATTTCTTGCACGACCGCTATTCAAAAAATTTTTCAGTATCCTTGAATGTCCATGATTATGTGGAACATCGA
ACAGAAACCTTGATTGACTTTACGCAAAAAGTTGCCAAACGCGTTTTGGAATCTGGTCAAGATTACACCATGGATCCCAT
GAGTAACAGTGAGCGTAAAATCGTTCATAAAACCGTTTCATCCATTGAAGGGGTTGATAGTTATTCTGAAGGCAATGACC
CTAACCGCTATGTGGTAGTCAGTCTTCAACGTTAG

Upstream 100 bases:

>100_bases
TTGCGGAAAGACAACGTCTTGCCAATGAAGAAAAAGAACGCCGTCTTCGTGAACGTCGTGCTCGTAAAAAAGCAATGAAG
AGAAAATAGGAGTTTAGGTT

Downstream 100 bases:

>100_bases
ATCCTAAAAAGAATCTTTGGTAGTTAGTTTAGCTATCGAAGATTTTTTGTATGGCCAGCTTAACCGTTTGTTTTACTGAT
CTCATTGATTATTGTTGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MVLFTGKTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVYKADKKATRGVPEDINRQNTP
AVNSADVEPEEIKATQRLEAEDTKVVPLMSEDSPAQTPSNLAETVTETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQ
EVSDYVTKIIYEMDIEATVETSNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHR
TETLIDFTQKVAKRVLESGQDYTMDPMSNSERKIVHKTVSSIEGVDSYSEGNDPNRYVVVSLQR

Sequences:

>Translated_304_residues
MVLFTGKTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVYKADKKATRGVPEDINRQNTP
AVNSADVEPEEIKATQRLEAEDTKVVPLMSEDSPAQTPSNLAETVTETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQ
EVSDYVTKIIYEMDIEATVETSNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHR
TETLIDFTQKVAKRVLESGQDYTMDPMSNSERKIVHKTVSSIEGVDSYSEGNDPNRYVVVSLQR
>Mature_304_residues
MVLFTGKTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVYKADKKATRGVPEDINRQNTP
AVNSADVEPEEIKATQRLEAEDTKVVPLMSEDSPAQTPSNLAETVTETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQ
EVSDYVTKIIYEMDIEATVETSNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHR
TETLIDFTQKVAKRVLESGQDYTMDPMSNSERKIVHKTVSSIEGVDSYSEGNDPNRYVVVSLQR

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 33868; Mature: 33868

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLFTGKTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVY
CEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHH
KADKKATRGVPEDINRQNTPAVNSADVEPEEIKATQRLEAEDTKVVPLMSEDSPAQTPSN
HCCHHHHCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHH
LAETVTETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQEVSDYVTKIIYEMDIEATVE
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TSNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHR
CCCCCEEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
TETLIDFTQKVAKRVLESGQDYTMDPMSNSERKIVHKTVSSIEGVDSYSEGNDPNRYVVV
HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
SLQR
EECC
>Mature Secondary Structure
MVLFTGKTVEEAIETGLQELGLSRLKAHIKVISKEKKGFLGFGKKPAQVDIEGISDKTVY
CEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHH
KADKKATRGVPEDINRQNTPAVNSADVEPEEIKATQRLEAEDTKVVPLMSEDSPAQTPSN
HCCHHHHCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHH
LAETVTETKAQQPSIPVEESEVPQDAGNDGFSKDIEKAAQEVSDYVTKIIYEMDIEATVE
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TSNNRRQINLQIETPEAGRVIGYHGKVLKSLQLLAQNFLHDRYSKNFSVSLNVHDYVEHR
CCCCCEEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
TETLIDFTQKVAKRVLESGQDYTMDPMSNSERKIVHKTVSSIEGVDSYSEGNDPNRYVVV
HHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
SLQR
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]