Click here to switch to the map view.

The map label for this gene is 15674412

Identifier: 15674412

GI number: 15674412

Start: 196863

End: 197564

Strand: Direct

Name: 15674412

Synonym: SPy_0223

Alternate gene names: NA

Gene position: 196863-197564 (Clockwise)

Preceding gene: 15674411

Following gene: 15674415

Centisome position: 10.63

GC content: 37.89

Gene sequence:

>702_bases
ATGATATTGCTGTTTAGGAGGTTTATCTTAGATGACACAGTTATTAAAACGATATCCTATTACTATTTTCCTTTTAGGGT
TAACAGGCTTAATTTTTATAGCAATGCAAGTGGTATATGGACATTTAGCAACTGGTGCTCAAGCTATTTATCAAGTTGGA
GGTATGTTTGGATTACTAGTAAAAGCAATGCCAGACCAGTTGTGGCGATTGGTGACTCCGATATTTATTCATATCGGCTT
TGGTCATTTTTTTGTCAATGGATTAACACTATATTTTGTTGGTCAAATCGTCGAAGACCTCTGGGGCTCACGCCTTTTTT
ATTACTTTATGTTTTATCAGGTGTTATGGGCAATGCCTTTACTTTTTGGTTGACTCCTGAAACAGTAGCTGCAGGAGCAT
CGACGTCGTTATTTGGACTTTTTGCTGCTATTGTAGTATTGAGTTTTTTGGGTAAGAACCAAGCGTTGAAAGATTTGGGC
AAGTCATACCAGACGTTAATTGTAGTCAATTTACTGATGAATCTTTTTATGCCAAACGTGAGTATGGCAGGCCATATTGG
CGGTGTCGTGGGTGGTGCGTTACTGAGTATAGTTTTTCCAACTAAGATGAGAGTGATAACAGTGAAGAAAACCAAGCGAA
TGTTGGCTTTAGTGAGCTATGGTATTATTTTGGTTGGTGTGTTAGTGCTTGGGTTTTTATAA

Upstream 100 bases:

>100_bases
ATGTAGACTTAAAACGTCAAAATGATCAAGCTTTATTAGTGGATGTTGTTAGCAATCAAGCTTATCAGCGGGCCAATACG
ATTGCCAAATCAAACGATTT

Downstream 100 bases:

>100_bases
AAATAAGTGAGTGGTTAGCACTGTTACTTCTCAGATGGCTAGTAGGATGAAATGACTTAAAAACCATAAAAATAAGGAGG
GATTTTCCCTCCTTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Rhomboid Family Protein; Rhomboid Family Membrane Protein; Small Hydrophobic Molecule Transporter Protein; Integral Membrane Protein; Rhomboid Protease GluP; Rhomboid-Related; Ypothetical Protein SMU.

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MILLFRRFILDDTVIKTISYYYFPFRVNRLNFYSNASGIWTFSNWCSSYLSSWRYVWITSKSNARPVVAIGDSDIYSYRL
WSFFCQWINTIFCWSNRRRPLGLTPFLLLYVLSGVMGNAFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKNQALKDLG
KSYQTLIVVNLLMNLFMPNVSMAGHIGGVVGGALLSIVFPTKMRVITVKKTKRMLALVSYGIILVGVLVLGFL

Sequences:

>Translated_233_residues
MILLFRRFILDDTVIKTISYYYFPFRVNRLNFYSNASGIWTFSNWCSSYLSSWRYVWITSKSNARPVVAIGDSDIYSYRL
WSFFCQWINTIFCWSNRRRPLGLTPFLLLYVLSGVMGNAFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKNQALKDLG
KSYQTLIVVNLLMNLFMPNVSMAGHIGGVVGGALLSIVFPTKMRVITVKKTKRMLALVSYGIILVGVLVLGFL
>Mature_233_residues
MILLFRRFILDDTVIKTISYYYFPFRVNRLNFYSNASGIWTFSNWCSSYLSSWRYVWITSKSNARPVVAIGDSDIYSYRL
WSFFCQWINTIFCWSNRRRPLGLTPFLLLYVLSGVMGNAFTFWLTPETVAAGASTSLFGLFAAIVVLSFLGKNQALKDLG
KSYQTLIVVNLLMNLFMPNVSMAGHIGGVVGGALLSIVFPTKMRVITVKKTKRMLALVSYGIILVGVLVLGFL

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26321; Mature: 26321

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLFRRFILDDTVIKTISYYYFPFRVNRLNFYSNASGIWTFSNWCSSYLSSWRYVWITS
CEEEHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCEEHHHHHHHHHCCCEEEEEEC
KSNARPVVAIGDSDIYSYRLWSFFCQWINTIFCWSNRRRPLGLTPFLLLYVLSGVMGNAF
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCE
TFWLTPETVAAGASTSLFGLFAAIVVLSFLGKNQALKDLGKSYQTLIVVNLLMNLFMPNV
EEEECCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
SMAGHIGGVVGGALLSIVFPTKMRVITVKKTKRMLALVSYGIILVGVLVLGFL
CHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILLFRRFILDDTVIKTISYYYFPFRVNRLNFYSNASGIWTFSNWCSSYLSSWRYVWITS
CEEEHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCEEHHHHHHHHHCCCEEEEEEC
KSNARPVVAIGDSDIYSYRLWSFFCQWINTIFCWSNRRRPLGLTPFLLLYVLSGVMGNAF
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCE
TFWLTPETVAAGASTSLFGLFAAIVVLSFLGKNQALKDLGKSYQTLIVVNLLMNLFMPNV
EEEECCHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
SMAGHIGGVVGGALLSIVFPTKMRVITVKKTKRMLALVSYGIILVGVLVLGFL
CHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA