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The map label for this gene is ytdC

Identifier: 15673847

GI number: 15673847

Start: 1935306

End: 1936097

Strand: Reverse

Name: ytdC

Synonym: L118668

Alternate gene names: 15673847

Gene position: 1936097-1935306 (Counterclockwise)

Preceding gene: 15673848

Following gene: 15673846

Centisome position: 81.84

GC content: 31.19

Gene sequence:

>792_bases
TTGATTACTGAAAATATCTATCAACACTTTCAAGAAAAGGAACGGCATTTTATTGATCGTTGTTTAGAATGGATAAATCG
AGTAGAAGAATCTTATTCGGTGATAAGTACATTTTTTCTTAATCCCCGAGAAGTGGATACTTTAAAAACTCTGGCAAATA
AGAGAAATGTTCAAATTTTTTCTAGTGAGGAACTAGCAAGAACGGAATTAGTCAAAATAATTTTGGCGCCAGATTTTTAT
GTTCTTGACAGAGAAGATTTTGATATTTGCTTACTTGAAATTAATTATGCTTCAAAATTTGTAGAACTTTCACATGCCCA
AGTCCTTGGAACTTTTTTGGGACAGGCTGGTGTTAAACGGCAAGAATTGGGTGATATTATTGTTAGTGACAATAAAATTC
AAGTTTTTGTCAGTAAACATCTTGTTGAGAGTTTTAAAGCAATAGAAAAAATTGGGCGAGCAGCGATCAAAATTCAAGAA
ATTTCTTTGGAAAACTTAGTTGAAGAAACAGATAAAGCTGTCAGAGAAGTTGTTCTTGTGGATAACTTAAGAGTTGATAA
AATGATTGCAGTCGCTTTCAAAATTTCTCGCAATATTGCTACAAATATGTTAGAATCAAAGAAGGTTAAGGTTAATTACC
TAGAAATTGATAAAAAAGATTTCTCTGTTGGTCTTGATGATTTGATTAGCGTTCGAGGTTTTGGGCGTATCAAAATATTA
AGGATTTTAGATTTTACTAAAAAAGGAAAACAGAGAGTTGAAATAGAACTTATAAGAAATCGAAAAAAATAG

Upstream 100 bases:

>100_bases
CTCTACAATTTTGGGGATTAGATTTTTCAATCGTTATTGCTTTTATTGTTTTGAAATTTATTCAAAGATTTATTGTTATT
GTATTTAACGGAGTATTCTA

Downstream 100 bases:

>100_bases
ATTCTAAGATGAAAATCAGATTTATAAGATTTTCTAAGGATAAAGAGGAGTGATTGATGACATTAAATAGTTTAGATGTT
CAAAACAAAACTTTTAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MITENIYQHFQEKERHFIDRCLEWINRVEESYSVISTFFLNPREVDTLKTLANKRNVQIFSSEELARTELVKIILAPDFY
VLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNKIQVFVSKHLVESFKAIEKIGRAAIKIQE
ISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKIL
RILDFTKKGKQRVEIELIRNRKK

Sequences:

>Translated_263_residues
MITENIYQHFQEKERHFIDRCLEWINRVEESYSVISTFFLNPREVDTLKTLANKRNVQIFSSEELARTELVKIILAPDFY
VLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNKIQVFVSKHLVESFKAIEKIGRAAIKIQE
ISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKIL
RILDFTKKGKQRVEIELIRNRKK
>Mature_263_residues
MITENIYQHFQEKERHFIDRCLEWINRVEESYSVISTFFLNPREVDTLKTLANKRNVQIFSSEELARTELVKIILAPDFY
VLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNKIQVFVSKHLVESFKAIEKIGRAAIKIQE
ISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKIL
RILDFTKKGKQRVEIELIRNRKK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30535; Mature: 30535

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITENIYQHFQEKERHFIDRCLEWINRVEESYSVISTFFLNPREVDTLKTLANKRNVQIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEE
SSEELARTELVKIILAPDFYVLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKR
CCHHHHHHHHHHHEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCH
QELGDIIVSDNKIQVFVSKHLVESFKAIEKIGRAAIKIQEISLENLVEETDKAVREVVLV
HHHCCEEEECCEEEEHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHH
DNLRVDKMIAVAFKISRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKIL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCHHHHHHHCCCCCEEEE
RILDFTKKGKQRVEIELIRNRKK
EEHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MITENIYQHFQEKERHFIDRCLEWINRVEESYSVISTFFLNPREVDTLKTLANKRNVQIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEE
SSEELARTELVKIILAPDFYVLDREDFDICLLEINYASKFVELSHAQVLGTFLGQAGVKR
CCHHHHHHHHHHHEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCH
QELGDIIVSDNKIQVFVSKHLVESFKAIEKIGRAAIKIQEISLENLVEETDKAVREVVLV
HHHCCEEEECCEEEEHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHH
DNLRVDKMIAVAFKISRNIATNMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKIL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCHHHHHHHCCCCCEEEE
RILDFTKKGKQRVEIELIRNRKK
EEHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]