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The map label for this gene is lnbA

Identifier: 15673476

GI number: 15673476

Start: 1526420

End: 1527397

Strand: Reverse

Name: lnbA

Synonym: L126168

Alternate gene names: 15673476

Gene position: 1527397-1526420 (Counterclockwise)

Preceding gene: 15673477

Following gene: 15673475

Centisome position: 64.57

GC content: 34.05

Gene sequence:

>978_bases
ATGGAAAAAGGATTATTAGTCGATATTGGACGAAAATATTGGTCAATAGCAGAGTTAAAAAGATTAGTTCTTTTACTTCA
AGAGCATAAGCTGACACATTTACAACTTCATCTCAATGAAAATGAAGGATTTGCGCTAAATTTTACTGACAGCCCTGTCA
GTAAAAAATATTCAGAAAATATGCTCAAAGAATTGAAAGAATTTGCAAAAACACACGAAATCACTTTGATTCCTGATTTT
GATAGTCCAGGTCACATGGGCTCCTTATTAGAGCAAAATCCTGAATTTGCACTACCTGACAGCAATCAACAAGCGGTAGA
TGTTACTAATCCAGCAGTCATTGATTGGATTATGGGAATAATTGATAAGATAGTCGATATTTTCCCAGATTCAGATACTT
TTCATATCGGGGCTGATGAATTTATTGATTTTCGGCAAATTGAAAAATATCCTTATTTAGTGGAGAAAACTCGGGAAAAA
TATGGAAATAAGGCAAGTGGTTTAGAGTTTTATTATGACTATGTTAATCAATTGACCGAGCATTTGCAGAAAAAAGGAAA
ACAAGTTCGTATTTGGAATGATGGATTTTTACGAAAAGACCTTCAGTCATTGGTTCCTTTGAATAAAAATGTGGAGGTTT
GTTATTGGACAAACTGGGACAAAGGGATGGCAGAAGTCAAAGAATGGTTAACTAAGGGTTATACCTTAATAAATTTTTGT
GATAATGACCTTTATTATGTTTTAGGTGAAGAAGCAGGCTATTCTTATCCAACGGCTGAAAAACTGGAAAGGGAAGGAAA
AATTCAAAAATTTTCTGGTCAGCAATATTTAAATCAAGAAGAGATGAAAGCTGTCAGAGGAACTTACTTTTCGATTTGGG
CTGACAATGCTGCAGCTAAGTCTGTCAGTGAAATTTTAGACGATCTTAGCAAGGTACTTCCGGTATTTATGAAAATTTAT
GGAGGAAATGATGAATAA

Upstream 100 bases:

>100_bases
ATACTTATCTAAAAAATAAATAAGAGGTAAACAAATCCAAGATCTCCTTTCTAAATTCATTTTGAAACTAGTTTGGAGGT
CTTATTTTATTGGAATTATT

Downstream 100 bases:

>100_bases
TTGGTGGAAAAAAGCAGTCATTTATCAAATTTATCCCCGGTCATTTAAGGATTCAAATGATGACGGAATTGGTGACATCA
ATGGAATAATAGAGAAATTA

Product: lacto-N-biosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MEKGLLVDIGRKYWSIAELKRLVLLLQEHKLTHLQLHLNENEGFALNFTDSPVSKKYSENMLKELKEFAKTHEITLIPDF
DSPGHMGSLLEQNPEFALPDSNQQAVDVTNPAVIDWIMGIIDKIVDIFPDSDTFHIGADEFIDFRQIEKYPYLVEKTREK
YGNKASGLEFYYDYVNQLTEHLQKKGKQVRIWNDGFLRKDLQSLVPLNKNVEVCYWTNWDKGMAEVKEWLTKGYTLINFC
DNDLYYVLGEEAGYSYPTAEKLEREGKIQKFSGQQYLNQEEMKAVRGTYFSIWADNAAAKSVSEILDDLSKVLPVFMKIY
GGNDE

Sequences:

>Translated_325_residues
MEKGLLVDIGRKYWSIAELKRLVLLLQEHKLTHLQLHLNENEGFALNFTDSPVSKKYSENMLKELKEFAKTHEITLIPDF
DSPGHMGSLLEQNPEFALPDSNQQAVDVTNPAVIDWIMGIIDKIVDIFPDSDTFHIGADEFIDFRQIEKYPYLVEKTREK
YGNKASGLEFYYDYVNQLTEHLQKKGKQVRIWNDGFLRKDLQSLVPLNKNVEVCYWTNWDKGMAEVKEWLTKGYTLINFC
DNDLYYVLGEEAGYSYPTAEKLEREGKIQKFSGQQYLNQEEMKAVRGTYFSIWADNAAAKSVSEILDDLSKVLPVFMKIY
GGNDE
>Mature_325_residues
MEKGLLVDIGRKYWSIAELKRLVLLLQEHKLTHLQLHLNENEGFALNFTDSPVSKKYSENMLKELKEFAKTHEITLIPDF
DSPGHMGSLLEQNPEFALPDSNQQAVDVTNPAVIDWIMGIIDKIVDIFPDSDTFHIGADEFIDFRQIEKYPYLVEKTREK
YGNKASGLEFYYDYVNQLTEHLQKKGKQVRIWNDGFLRKDLQSLVPLNKNVEVCYWTNWDKGMAEVKEWLTKGYTLINFC
DNDLYYVLGEEAGYSYPTAEKLEREGKIQKFSGQQYLNQEEMKAVRGTYFSIWADNAAAKSVSEILDDLSKVLPVFMKIY
GGNDE

Specific function: Unknown

COG id: COG3525

COG function: function code G; N-acetyl-beta-hexosaminidase

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 G5 domains [H]

Homologues:

Organism=Caenorhabditis elegans, GI17569815, Length=219, Percent_Identity=26.4840182648402, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011098
- InterPro:   IPR001540
- InterPro:   IPR015883
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR005877
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR001899 [H]

Pfam domain/function: PF07501 G5; PF00728 Glyco_hydro_20; PF00746 Gram_pos_anchor; PF04650 YSIRK_signal [H]

EC number: =3.2.1.52 [H]

Molecular weight: Translated: 37642; Mature: 37642

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKGLLVDIGRKYWSIAELKRLVLLLQEHKLTHLQLHLNENEGFALNFTDSPVSKKYSEN
CCCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCHHHHHHHH
MLKELKEFAKTHEITLIPDFDSPGHMGSLLEQNPEFALPDSNQQAVDVTNPAVIDWIMGI
HHHHHHHHHHHCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHH
IDKIVDIFPDSDTFHIGADEFIDFRQIEKYPYLVEKTREKYGNKASGLEFYYDYVNQLTE
HHHHHHHCCCCCEEEECHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HLQKKGKQVRIWNDGFLRKDLQSLVPLNKNVEVCYWTNWDKGMAEVKEWLTKGYTLINFC
HHHHCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEE
DNDLYYVLGEEAGYSYPTAEKLEREGKIQKFSGQQYLNQEEMKAVRGTYFSIWADNAAAK
CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCEEEEECCCHHHH
SVSEILDDLSKVLPVFMKIYGGNDE
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKGLLVDIGRKYWSIAELKRLVLLLQEHKLTHLQLHLNENEGFALNFTDSPVSKKYSEN
CCCCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCHHHHHHHH
MLKELKEFAKTHEITLIPDFDSPGHMGSLLEQNPEFALPDSNQQAVDVTNPAVIDWIMGI
HHHHHHHHHHHCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHH
IDKIVDIFPDSDTFHIGADEFIDFRQIEKYPYLVEKTREKYGNKASGLEFYYDYVNQLTE
HHHHHHHCCCCCEEEECHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HLQKKGKQVRIWNDGFLRKDLQSLVPLNKNVEVCYWTNWDKGMAEVKEWLTKGYTLINFC
HHHHCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEE
DNDLYYVLGEEAGYSYPTAEKLEREGKIQKFSGQQYLNQEEMKAVRGTYFSIWADNAAAK
CCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHCCHHHHHHHHCCEEEEECCCHHHH
SVSEILDDLSKVLPVFMKIYGGNDE
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721787; 11463916 [H]