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The map label for this gene is ypcD

Identifier: 15673474

GI number: 15673474

Start: 1523176

End: 1524816

Strand: Reverse

Name: ypcD

Synonym: L122924

Alternate gene names: NA

Gene position: 1524816-1523176 (Counterclockwise)

Preceding gene: 15673475

Following gene: 15673473

Centisome position: 64.46

GC content: 36.81

Gene sequence:

>1641_bases
ATGAAAAAATCGAAAAAATTTTTTATTAGAATATGCCTTTCTACAGGAATTTTGGCATCTGCAACTTTACTGACAGCTTG
TTTTGGAACTCCAGCAAAACATGTGAAAGCTAATTATAAAGTGACAGCAGAAGCAATTCCAGATTACCAAAGTAAGAATG
CTCCCATTTCATCTTATTGGATGCCTGATAAATTTCTAGAATGGTCAGCGGAAAATGACAAAGATTTAGTTTACAATCAA
TCCCGAGTGCCACTTACCAAAAGAATTTCTCCTGATAAACTAAGTCCATCCAATCAAAATCAGAACAAAAAGACAAAAAT
TGTCGCCTTGTCGATGATGAACTCACAAACTTCTGGAAATCCTTCGCGGGGCACGACAAAATTTGAGAGCTATACTTTTG
ATTATTGGCAATATATTGACACACTGGTTTATTGGGGTGGCTCATCTGGTGAAGGAATAATTGTAACTCCGTCAGCAGAT
GTTATTGATGAAGCACACAGCAATGGTGTTCCGGTACTTGGAACAATTTTCTTGCCGCCTAAAGAATACGGTGGAAAAGT
AGATTGGGTCAAAACAATGCTCAAAAAAGATGAGCAAGGACAATATCCATTTGCCAGTCAAATGGTTAAGGTTGCCAAGA
CTTATGGATTTGAGGGTTGGTTTATCAATGAAGAAACCCAAGGGCTAAATGCTGACGATGCAGCTAACATGAAAGCCTTG
ATTCAACAGGTGAAAAAAGAAGATTCTAGTCTTCAAATCATGTGGTATGATGCCATGACTAAAGATGGAAAAGTGGATTG
GCAAAATCAGTTAAATGACCAAAATGCGACATTTGTACAAGATAAAGCAGCAGACGCGATGTTTTTAAATTTCTGGTGGA
CTCAAAATAATTTGGCCGACCAAAAATTACTTGAAAAATCGAATCTCTATGCTAAAAATCACAATATTGACCCTTATAAT
ATTTATGCCGGAATAGATGTGCAAGCGAAAGACGTCCAAACTCCAGTTAAATGGAACCTTTTAGAAAAAGGAAATCAAGC
CACTCAAACATCAATTGGACTCTATGCAGCAAGCGCTACCTACACTAACGCAAGTAATTGGGATGATTTTCAAAATCGTG
AATCAGCATTCTGGGTCAATCAAAAAGCAGACCCTCGTCAAGTTGATCACTCTGTTAATGAATCATGGACAGGACTTTCC
AAATATGTTCTGGAAAAATCAGCAATAAGCGGTAATGAATTTAATACTAATTTTAATTTAGGAAATGGTTATAACTATTT
TAAAGCTGGTCAAAAAATCTCAGAAATGGATTGGAACGACCGCAGTTTAGCAGGTATTTTACCATCTTACCGCTGGATTA
TTGACAACGAAGGAAAAAATAAAATAAGTCCAAGCTTCGACTTTGCAAATGCTTATAACGGTGGAAATTCACTGAAATTT
ATGGCTGAACATTTAGATGCAGGCAAAAGCTCAAACATCACATTGTTTGCTAGTGATTTGAAAATTGCTATGGGAGCAAA
ATTCTCTGTTAGTATGCGCTCAGACCAAGCGCTTAAAGTTTCTGCAATCTTAGAACTAGCAAATGGTCAAAAAGTTAGCA
TTGCAGGAGATAAAAGCCTGACTGAGAATTGGTCAAAATAA

Upstream 100 bases:

>100_bases
CAGCTTTCCAGATTTACTGACAGACATAGAAATTTAACCTTGGCAAGCTTTTGCTTTAGAAATAAAAAATCTTGATTAAT
AAATTTTATTGGAGGATTTT

Downstream 100 bases:

>100_bases
GTTTTGATGTTAAGAAATTTGAAGGTCAAACAATCAAAAAAATCGGTTTAAGCATAAAATCTGATCAAGCAATGGATTTT
AAAGCCATTAATCTAGGAGA

Product: endo-beta-N-acetylglucosaminidase

Products: NA

Alternate protein names: Mannosyl-Glycoprotein Endo-Beta-N-Acetylglucosaminidase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family Protein; Endo-Beta-N-Acetylglucosaminidase Family Protein; Glycoside Hydrolase Family; Endo-Beta-N-Acetylglucosaminidase D; Glycosyl Hydrolase Family LPXTG Cell Wall Surface Protein

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYWMPDKFLEWSAENDKDLVYNQ
SRVPLTKRISPDKLSPSNQNQNKKTKIVALSMMNSQTSGNPSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSAD
VIDEAHSNGVPVLGTIFLPPKEYGGKVDWVKTMLKKDEQGQYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKAL
IQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLADQKLLEKSNLYAKNHNIDPYN
IYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASATYTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLS
KYVLEKSAISGNEFNTNFNLGNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKF
MAEHLDAGKSSNITLFASDLKIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSLTENWSK

Sequences:

>Translated_546_residues
MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYWMPDKFLEWSAENDKDLVYNQ
SRVPLTKRISPDKLSPSNQNQNKKTKIVALSMMNSQTSGNPSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSAD
VIDEAHSNGVPVLGTIFLPPKEYGGKVDWVKTMLKKDEQGQYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKAL
IQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLADQKLLEKSNLYAKNHNIDPYN
IYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASATYTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLS
KYVLEKSAISGNEFNTNFNLGNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKF
MAEHLDAGKSSNITLFASDLKIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSLTENWSK
>Mature_546_residues
MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYWMPDKFLEWSAENDKDLVYNQ
SRVPLTKRISPDKLSPSNQNQNKKTKIVALSMMNSQTSGNPSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSAD
VIDEAHSNGVPVLGTIFLPPKEYGGKVDWVKTMLKKDEQGQYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKAL
IQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLADQKLLEKSNLYAKNHNIDPYN
IYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASATYTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLS
KYVLEKSAISGNEFNTNFNLGNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKF
MAEHLDAGKSSNITLFASDLKIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSLTENWSK

Specific function: Unknown

COG id: COG4724

COG function: function code G; Endo-beta-N-acetylglucosaminidase D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110431350, Length=489, Percent_Identity=24.1308793456033, Blast_Score=118, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71983972, Length=218, Percent_Identity=30.2752293577982, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983968, Length=218, Percent_Identity=30.2752293577982, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983964, Length=270, Percent_Identity=27.037037037037, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571242, Length=414, Percent_Identity=23.9130434782609, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24642794, Length=414, Percent_Identity=23.9130434782609, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61165; Mature: 61165

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYW
CCCCCEEEEEEEHHCCHHHHHHHHHHHHCCCHHHEECCCEEEECCCCCCCCCCCCCCCCC
MPDKFLEWSAENDKDLVYNQSRVPLTKRISPDKLSPSNQNQNKKTKIVALSMMNSQTSGN
CCHHHHCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
PSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSADVIDEAHSNGVPVLGTIFLPP
CCCCCCCHHHCCHHHHHHHHHHEEECCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEECC
KEYGGKVDWVKTMLKKDEQGQYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKAL
HHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHH
IQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLAD
HHHHHCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCHH
QKLLEKSNLYAKNHNIDPYNIYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASAT
HHHHHHHCCEEECCCCCCEEEEEECEEEHHCCCCCCEEEHHHCCCCCHHCEEEEEEEEEE
YTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLSKYVLEKSAISGNEFNTNFNL
ECCCCCCCHHCCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
GNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKF
CCCCCHHHCCCCHHHCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
MAEHLDAGKSSNITLFASDLKIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSL
HHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCEEEEEHHHHCCCCEEEEECCCHH
TENWSK
HCCCCC
>Mature Secondary Structure
MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYW
CCCCCEEEEEEEHHCCHHHHHHHHHHHHCCCHHHEECCCEEEECCCCCCCCCCCCCCCCC
MPDKFLEWSAENDKDLVYNQSRVPLTKRISPDKLSPSNQNQNKKTKIVALSMMNSQTSGN
CCHHHHCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
PSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSADVIDEAHSNGVPVLGTIFLPP
CCCCCCCHHHCCHHHHHHHHHHEEECCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEECC
KEYGGKVDWVKTMLKKDEQGQYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKAL
HHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHH
IQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLAD
HHHHHCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCEEEECCCCCEEEEEEEECCCCCHH
QKLLEKSNLYAKNHNIDPYNIYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASAT
HHHHHHHCCEEECCCCCCEEEEEECEEEHHCCCCCCEEEHHHCCCCCHHCEEEEEEEEEE
YTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLSKYVLEKSAISGNEFNTNFNL
ECCCCCCCHHCCCCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
GNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKF
CCCCCHHHCCCCHHHCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
MAEHLDAGKSSNITLFASDLKIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSL
HHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCEEEEEHHHHCCCCEEEEECCCHH
TENWSK
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA