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The map label for this gene is rbgA

Identifier: 15673276

GI number: 15673276

Start: 1329206

End: 1330054

Strand: Reverse

Name: rbgA

Synonym: L128951

Alternate gene names: 15673276

Gene position: 1330054-1329206 (Counterclockwise)

Preceding gene: 15673277

Following gene: 15673275

Centisome position: 56.23

GC content: 36.87

Gene sequence:

>849_bases
ATGGTAATACAATGGTTTCCTGGGCATATGTCCAAAGCACGTCGTCAGGTGCAAGAAAATTTAAAATATGTTGATTTTGT
GATTGAATTGGTTGATGCTCGTCTCCCTATTTCTTCACGTAATCCGATGTTGGGGCAAATTATTGGAGATAAACCAAGAA
TTATTGCTTTAAATAAAGCTGATTTAGCTGATTCTAATGCAGTAGCACAATGGATCGAATTTTTTGATGAACAAGGTTTT
GTAACTTTAGCCATTAATTCTAAAGAAGAATATACAGCAAAAAGATTAACTGTTGCTGCTAAAAAATTGATGGCTGATAA
GGTCGCTCATGATAAGGAGCGCGGCATTGCTCATACTACTTTGCGAACAATGATTATCGGAATTCCGAATGCAGGGAAGT
CAACTTTGATGAATCGCTTAGCAGGTAAAAAAGTTGCAGTGACTGGGAACCGTCCAGGGGTAACTAAGGGTCAACAATGG
ATTCGAACCAATAAAGAATTAGAATTATTGGACACACCAGGTATTCTTTGGCCAAAATTTGAAGATCAACTTGTTGGTTT
AAAATTAGCTTTGACTGGGGCAATTAAGGATGATTTATTGCCAATGGATGAGGTAACAATTTTTGGATTAAATTATTTTT
TGAAGAACTATCGAACAGTCACAATGAAACGATATCGAATGACAGAAGAAGATTTGGAGCTTGAAATTCCAGACTTAATT
ATGGAGTTGACCGCAAGATTTGGTTTCCGTGATGATTATGATCGTTTCTATAATATGTTTGTCAAAGATGTTCGAGATGG
AAAACTGGGCTTGTTCTGTTTGGACGAAGTCGGAGTTGACGGACTTTGA

Upstream 100 bases:

>100_bases
GTAGAATAAAAACTCAGCTAAGTCTTGATTTTTATCTGAATGTTAAATTAGAAATATATAAAAGCTGTCGAGATGTACAG
TTGATTTGAGGAGTATTAAT

Downstream 100 bases:

>100_bases
TTTTATGATTTTATGATTTTATGATTTTATGATTGTGTGATTACTGACAGATTTTCAGTATCAATAACATAAATAATATT
ATGTAAAACTACTGACAGAA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADLADSNAVAQWIEFFDEQGF
VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQW
IRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFLKNYRTVTMKRYRMTEEDLELEIPDLI
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGVDGL

Sequences:

>Translated_282_residues
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADLADSNAVAQWIEFFDEQGF
VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQW
IRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFLKNYRTVTMKRYRMTEEDLELEIPDLI
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGVDGL
>Mature_282_residues
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKADLADSNAVAQWIEFFDEQGF
VTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTTLRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQW
IRTNKELELLDTPGILWPKFEDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFLKNYRTVTMKRYRMTEEDLELEIPDLI
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGVDGL

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=233, Percent_Identity=32.1888412017167, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI296317324, Length=178, Percent_Identity=28.0898876404494, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI9506611, Length=178, Percent_Identity=28.0898876404494, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193211047, Length=318, Percent_Identity=28.9308176100629, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17534827, Length=202, Percent_Identity=30.6930693069307, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI25143545, Length=287, Percent_Identity=25.7839721254355, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=189, Percent_Identity=28.042328042328, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=287, Percent_Identity=25.7839721254355, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323744, Length=235, Percent_Identity=28.5106382978723, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324381, Length=166, Percent_Identity=29.5180722891566, Blast_Score=63, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320842, Length=190, Percent_Identity=26.3157894736842, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI85815858, Length=308, Percent_Identity=31.8181818181818, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28572990, Length=235, Percent_Identity=30.6382978723404, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32087; Mature: 32087

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEECCCCCEEEEECC
DLADSNAVAQWIEFFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTT
CCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKF
HHHHEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCC
EDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFLKNYRTVTMKRYRMTEEDLELEIPDLI
CCHHEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHEEEHHHHHCCHHHCCEEHHHHH
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGVDGL
HHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MVIQWFPGHMSKARRQVQENLKYVDFVIELVDARLPISSRNPMLGQIIGDKPRIIALNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEECCCCCEEEEECC
DLADSNAVAQWIEFFDEQGFVTLAINSKEEYTAKRLTVAAKKLMADKVAHDKERGIAHTT
CCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LRTMIIGIPNAGKSTLMNRLAGKKVAVTGNRPGVTKGQQWIRTNKELELLDTPGILWPKF
HHHHEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCCC
EDQLVGLKLALTGAIKDDLLPMDEVTIFGLNYFLKNYRTVTMKRYRMTEEDLELEIPDLI
CCHHEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHEEEHHHHHCCHHHCCEEHHHHH
MELTARFGFRDDYDRFYNMFVKDVRDGKLGLFCLDEVGVDGL
HHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]