Click here to switch to the map view.

The map label for this gene is ynaB

Identifier: 15673253

GI number: 15673253

Start: 1302355

End: 1303113

Strand: Reverse

Name: ynaB

Synonym: L102100

Alternate gene names: NA

Gene position: 1303113-1302355 (Counterclockwise)

Preceding gene: 15673254

Following gene: 15673252

Centisome position: 55.09

GC content: 33.47

Gene sequence:

>759_bases
ATGAATTTTGGTCAGAACTTAAAAAAATTAAGAAAAAATGCAAAATTGACACAGAGTCAATTAGCAGAAAAGCTAGGAAT
GAAGCAAAATGCTTATGTACTTTGGGAACAAAAATCAACCAACCCAACGTTAGAAATACTAGAAAAACTCGCAGATATCT
ATGATTTACCTATTCAAGAATTAATCAAAGAAACTGATAATAATGCAGAAAAACAATTAATCGATAATTATCGTTCACTG
ACAGGAGAACAACAAGAATCAGTTATTAATTTTACGGATTTTCTCATTGAACAAAATAAAACAGAGATTATTAATTTGAA
AACCTACAGACGTTCTTCTTTAGATTATGCCATTGTTGAAGATGAAGAATTATCGGCAGGTTTTGGTCAATCTCAAAGCA
ATACAGGGGGGCATTACAAAGCTTACACATCTGAAACTCTTGGTCGATATGATGGTGCAGCTAGAGTAAAAGGGGAATCG
ATGGAACCTGAATTCCCTAATTTTTCTATTGCAACATTCTTACACACGGGTTTCGGTCGGAGTGGGGATATTTACGCCAT
TGCTGAAGGAGATTTGGGCGAAGAACGTTTGTATATCAAACAAGTATTTGAAGAAGAAGATGGACAATTTAGAATTCATT
CACTCAATCCAGATCCACAATACAAGGATTTTTATCTAGGACAGGAAGATAATTTCCGAATTATTGGACCAGTAGTTGAT
AATTTTGAAGAAATTGAAGAATCACAGATTATAGATTAA

Upstream 100 bases:

>100_bases
TTTTTCATTTATCAGTTTTTCTGATAAAAAATATTGACAAAAAATAAAATAAACGATATAATATAAGAAAGATTGATAAA
GAATCGGGAAGGGAGAGTTT

Downstream 100 bases:

>100_bases
AATGAGGGCTTAAAAATGAATTGGATAAGAGAAATTTTACCAATACTGGGAATTGGATCAATTTTTGCAATTGCTTATGA
ATTAGTTTTATGGCTTTCAC

Product: transcription regulator

Products: NA

Alternate protein names: Phage Transcriptional Repressor; Phage Repressor-Like Protein; Transcriptional Regulator Cro/CI Family; XRE Family Transcriptional Regulator; HTH-Type Transcriptional Regulator HdiR; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Repressor

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQELIKETDNNAEKQLIDNYRSL
TGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGES
MEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVD
NFEEIEESQIID

Sequences:

>Translated_252_residues
MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQELIKETDNNAEKQLIDNYRSL
TGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGES
MEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVD
NFEEIEESQIID
>Mature_252_residues
MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQELIKETDNNAEKQLIDNYRSL
TGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAIVEDEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGES
MEPEFPNFSIATFLHTGFGRSGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVD
NFEEIEESQIID

Specific function: Unknown

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28894; Mature: 28894

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQE
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHH
LIKETDNNAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAIVE
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCEEEEC
DEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTGFGR
CCHHCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHCCCC
SGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVD
CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCCEEECHHHC
NFEEIEESQIID
CHHHHHHHHCCC
>Mature Secondary Structure
MNFGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQE
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHH
LIKETDNNAEKQLIDNYRSLTGEQQESVINFTDFLIEQNKTEIINLKTYRRSSLDYAIVE
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCEEEEC
DEELSAGFGQSQSNTGGHYKAYTSETLGRYDGAARVKGESMEPEFPNFSIATFLHTGFGR
CCHHCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHCCCC
SGDIYAIAEGDLGEERLYIKQVFEEEDGQFRIHSLNPDPQYKDFYLGQEDNFRIIGPVVD
CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCCEEECHHHC
NFEEIEESQIID
CHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA