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The map label for this gene is ymdE

Identifier: 15673199

GI number: 15673199

Start: 1238443

End: 1239402

Strand: Reverse

Name: ymdE

Synonym: L38177

Alternate gene names: 15673199

Gene position: 1239402-1238443 (Counterclockwise)

Preceding gene: 15673201

Following gene: 15673178

Centisome position: 52.39

GC content: 39.17

Gene sequence:

>960_bases
ATGACTCAAGATTATCGAGTTTTATTATATTACCAATATGTCCCAATTGAAGATGGAGAAACTTTTGCCCAAAAACACCT
CGCAGACTGTAAAGAATTAGGTTTAAAAGGACGCATTTTAGTTGCTGACGAAGGAATTAACGGAACTGTTTCTGGTACTA
TCGAGCAAACAAATGCCTACATGGAATTGATGAAAAATGACCCTCGCTTTAGCTCAACAATTTTCAAAATTGATGAAGCC
GAGCAAAATGCTTTTAAGAAAATGCATGTTCGTTATCGCCCTGAATTAGTCAATTTAAGTTTAGAAGATGACGTCAATCC
CTTGGAACTTACTGGGGCTTATCTTGATCCAAAAGAGTTTCGTGAGGCCATGCTTGATGAAAATACAGTAGTGATTGATG
CACGAAATGATTATGAATTTGACTTAGGGCATTTTCGTGGCGCCATTCGTCCAGAAATAAGAAGTTTTAGAGAACTTCCA
CAGTGGATTCGAGATAACAAAGAACAATTCATGGAAAAACGTGTTTTAACCTACTGTACCGGTGGAATACGTTGTGAAAA
ATTTTCAGGATGGCTCGTTCGGGAAGGCTTCAAAGACGTTGGTCAACTTCACGGAGGAATTGCCACATACGGAAAAGACC
CAGAAGTTCAAGGAGATCTCTGGGATGGACAAATGTATGTTTTTGATAGCCGAATCGCAGTTCCAATCAACCAAAAAGAA
CATGTCATTGTCGGACGTGATTGGTTTGATGGAAGCCCATGTGAACGTTACATCAATTGCGGAAATCCAGAATGTAACAG
ACAAATGTTAGCTTCAGAGGAAAACGAAGCAAAATATCTTGGTGCTTGTTCACATGAATGTCGAGTTCATCCCAATAACC
GTTACATCAAAGCCCACCAACTATCAAATCAAGAAGTTCAAGAACGTCTTGCGCTACTTGAGAAAGATTTAGCATCATAA

Upstream 100 bases:

>100_bases
GCTTGTTAGAAAATATACAAGCAATTTTGTTGCTTTAGGTAGACATAAAATGATTAAATTATAATGGATTCTAATGTACT
AATAAGATTAAGGAGAAATT

Downstream 100 bases:

>100_bases
TATAAAAAGTCTATTATTCTTTAATAGACTTTTTATTTTTATCAATTTTCATCCCACTAAAAGTTGCTAGTTCGTGAAAA
CCAGCTTTTTTAATTAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTQDYRVLLYYQYVPIEDGETFAQKHLADCKELGLKGRILVADEGINGTVSGTIEQTNAYMELMKNDPRFSSTIFKIDEA
EQNAFKKMHVRYRPELVNLSLEDDVNPLELTGAYLDPKEFREAMLDENTVVIDARNDYEFDLGHFRGAIRPEIRSFRELP
QWIRDNKEQFMEKRVLTYCTGGIRCEKFSGWLVREGFKDVGQLHGGIATYGKDPEVQGDLWDGQMYVFDSRIAVPINQKE
HVIVGRDWFDGSPCERYINCGNPECNRQMLASEENEAKYLGACSHECRVHPNNRYIKAHQLSNQEVQERLALLEKDLAS

Sequences:

>Translated_319_residues
MTQDYRVLLYYQYVPIEDGETFAQKHLADCKELGLKGRILVADEGINGTVSGTIEQTNAYMELMKNDPRFSSTIFKIDEA
EQNAFKKMHVRYRPELVNLSLEDDVNPLELTGAYLDPKEFREAMLDENTVVIDARNDYEFDLGHFRGAIRPEIRSFRELP
QWIRDNKEQFMEKRVLTYCTGGIRCEKFSGWLVREGFKDVGQLHGGIATYGKDPEVQGDLWDGQMYVFDSRIAVPINQKE
HVIVGRDWFDGSPCERYINCGNPECNRQMLASEENEAKYLGACSHECRVHPNNRYIKAHQLSNQEVQERLALLEKDLAS
>Mature_318_residues
TQDYRVLLYYQYVPIEDGETFAQKHLADCKELGLKGRILVADEGINGTVSGTIEQTNAYMELMKNDPRFSSTIFKIDEAE
QNAFKKMHVRYRPELVNLSLEDDVNPLELTGAYLDPKEFREAMLDENTVVIDARNDYEFDLGHFRGAIRPEIRSFRELPQ
WIRDNKEQFMEKRVLTYCTGGIRCEKFSGWLVREGFKDVGQLHGGIATYGKDPEVQGDLWDGQMYVFDSRIAVPINQKEH
VIVGRDWFDGSPCERYINCGNPECNRQMLASEENEAKYLGACSHECRVHPNNRYIKAHQLSNQEVQERLALLEKDLAS

Specific function: Unknown. [C]

COG id: COG1054

COG function: function code R; Predicted sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Homo sapiens, GI111038120, Length=301, Percent_Identity=33.8870431893688, Blast_Score=165, Evalue=5e-41,
Organism=Escherichia coli, GI1787294, Length=286, Percent_Identity=29.020979020979, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022111
- InterPro:   IPR001763
- InterPro:   IPR020936 [H]

Pfam domain/function: PF12368 DUF3650; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 36850; Mature: 36719

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQDYRVLLYYQYVPIEDGETFAQKHLADCKELGLKGRILVADEGINGTVSGTIEQTNAY
CCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECEEHHHHHH
MELMKNDPRFSSTIFKIDEAEQNAFKKMHVRYRPELVNLSLEDDVNPLELTGAYLDPKEF
HHHHHCCCCCCCEEEEECHHHHHHHHHHHHEECCEEEEEECCCCCCCEEEECCCCCHHHH
REAMLDENTVVIDARNDYEFDLGHFRGAIRPEIRSFRELPQWIRDNKEQFMEKRVLTYCT
HHHHCCCCEEEEECCCCCCEEHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GGIRCEKFSGWLVREGFKDVGQLHGGIATYGKDPEVQGDLWDGQMYVFDSRIAVPINQKE
CCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCEEEEEECEEEEECCCCC
HVIVGRDWFDGSPCERYINCGNPECNRQMLASEENEAKYLGACSHECRVHPNNRYIKAHQ
EEEEECCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCEEECCCCCCEECCCCCEEEEEC
LSNQEVQERLALLEKDLAS
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQDYRVLLYYQYVPIEDGETFAQKHLADCKELGLKGRILVADEGINGTVSGTIEQTNAY
CCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECEEHHHHHH
MELMKNDPRFSSTIFKIDEAEQNAFKKMHVRYRPELVNLSLEDDVNPLELTGAYLDPKEF
HHHHHCCCCCCCEEEEECHHHHHHHHHHHHEECCEEEEEECCCCCCCEEEECCCCCHHHH
REAMLDENTVVIDARNDYEFDLGHFRGAIRPEIRSFRELPQWIRDNKEQFMEKRVLTYCT
HHHHCCCCEEEEECCCCCCEEHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GGIRCEKFSGWLVREGFKDVGQLHGGIATYGKDPEVQGDLWDGQMYVFDSRIAVPINQKE
CCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCEEEEEECEEEEECCCCC
HVIVGRDWFDGSPCERYINCGNPECNRQMLASEENEAKYLGACSHECRVHPNNRYIKAHQ
EEEEECCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCEEECCCCCCEECCCCCEEEEEC
LSNQEVQERLALLEKDLAS
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA