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The map label for this gene is rdrA

Identifier: 15672771

GI number: 15672771

Start: 796549

End: 797292

Strand: Reverse

Name: rdrA

Synonym: L0152

Alternate gene names: 15672771

Gene position: 797292-796549 (Counterclockwise)

Preceding gene: 15672772

Following gene: 15672744

Centisome position: 33.7

GC content: 34.41

Gene sequence:

>744_bases
ATGTCCCGTTCTGACGAAATCATTCGCATTGTGAGTGATTATAAAAAAATTGAAGTCAATCAACTTTCACAACTCCTTAA
TGTTTCAAACGTAACGATTCGAAAAGACCTTGATAAACTTGAAGAGAAAGGAATTATTAATCGCCAGCACGGTTTTGCTT
TGATTAATAATACAGATGATATCAATTTTCGTTTAGCCAAAAACTATGATTTAAAGCGAAAAATTGCTGTCAAAGCTGCT
GAAAATATTCTTGATGGGGATACAGTAATGATTGAATCTGGTTCTACTTGCGCTTTGCTTGCTGAAGAGTTAGCCTTTAA
TCGAAAAAATGTCACTATCATCACTAACTCTGTTTTTATTGCCAATTATATTCGTAAATCCGACTCGGTAAAAGTAATTT
TATTAGGAGGAGAATATCAAAATAATTCACAGGTCAACGTTGGACCTCTGATAAAAAAGGTGGTTGATGAATTTTACGTT
GATAAATTATTTATCGGTATTGATGGTTTTGACCCGGTCCGCGGTTTTAGAAGTAATGATCTCGCTCGTAGTGAAGCCAT
TCATGTCATGGCTGCTGCGGCTAAGGAAGTGATTATTTTAACTGATGCTTCTAAATTCAACCAAAATGGAACTGTCACCT
GTTTTTCATTCCCTGAAATTTCCCAAGTTTTTACTGACAAGTCAATCAATGCAGGAAGTCAAAAAATTCTCGATTTGAAA
AAAATAAAGGTTACTACTATCTAA

Upstream 100 bases:

>100_bases
TCATTGACTTACGAACGAAAGGTTTTCTAATAAAAAGGTTTATTTTTTTAGATTTTTGTGGTAGTCTTAAAATATAAAAA
AGATGACGAAAGGCTACTAA

Downstream 100 bases:

>100_bases
TTAAAAATGGACGATGTCCATTTTTTTATTGACAGATTTTCTAAAATATGATATATTTTCTTCATAAGAAAGAATTATGC
TTTCGTTTGAAAGTTTTGCT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSRSDEIIRIVSDYKKIEVNQLSQLLNVSNVTIRKDLDKLEEKGIINRQHGFALINNTDDINFRLAKNYDLKRKIAVKAA
ENILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFIANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYV
DKLFIGIDGFDPVRGFRSNDLARSEAIHVMAAAAKEVIILTDASKFNQNGTVTCFSFPEISQVFTDKSINAGSQKILDLK
KIKVTTI

Sequences:

>Translated_247_residues
MSRSDEIIRIVSDYKKIEVNQLSQLLNVSNVTIRKDLDKLEEKGIINRQHGFALINNTDDINFRLAKNYDLKRKIAVKAA
ENILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFIANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYV
DKLFIGIDGFDPVRGFRSNDLARSEAIHVMAAAAKEVIILTDASKFNQNGTVTCFSFPEISQVFTDKSINAGSQKILDLK
KIKVTTI
>Mature_246_residues
SRSDEIIRIVSDYKKIEVNQLSQLLNVSNVTIRKDLDKLEEKGIINRQHGFALINNTDDINFRLAKNYDLKRKIAVKAAE
NILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFIANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVD
KLFIGIDGFDPVRGFRSNDLARSEAIHVMAAAAKEVIILTDASKFNQNGTVTCFSFPEISQVFTDKSINAGSQKILDLKK
IKVTTI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=249, Percent_Identity=39.3574297188755, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=30.6772908366534, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=31.1740890688259, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788069, Length=234, Percent_Identity=32.0512820512821, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87082344, Length=248, Percent_Identity=25.4032258064516, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789829, Length=245, Percent_Identity=27.7551020408163, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=25.4310344827586, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI226510968, Length=239, Percent_Identity=23.4309623430962, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790635, Length=239, Percent_Identity=25.1046025104602, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790753, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27548; Mature: 27417

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSDEIIRIVSDYKKIEVNQLSQLLNVSNVTIRKDLDKLEEKGIINRQHGFALINNTDD
CCCCHHHHHHHHHHHEECHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCEEEEECCCC
INFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFI
CEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCEEE
ANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPVRGFRSND
HHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
LARSEAIHVMAAAAKEVIILTDASKFNQNGTVTCFSFPEISQVFTDKSINAGSQKILDLK
CHHHHHHHHEEECCCEEEEEECCHHCCCCCCEEEEECCHHHHHHCCCCCCCCCHHHEEEE
KIKVTTI
EEEEEEC
>Mature Secondary Structure 
SRSDEIIRIVSDYKKIEVNQLSQLLNVSNVTIRKDLDKLEEKGIINRQHGFALINNTDD
CCCHHHHHHHHHHHEECHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCEEEEECCCC
INFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNVTIITNSVFI
CEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCEEE
ANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPVRGFRSND
HHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
LARSEAIHVMAAAAKEVIILTDASKFNQNGTVTCFSFPEISQVFTDKSINAGSQKILDLK
CHHHHHHHHEEECCCEEEEEECCHHCCCCCCEEEEECCHHHHHHCCCCCCCCCHHHEEEE
KIKVTTI
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]