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The map label for this gene is ygcA

Identifier: 15672613

GI number: 15672613

Start: 619610

End: 620311

Strand: Direct

Name: ygcA

Synonym: L19516

Alternate gene names: 15672613

Gene position: 619610-620311 (Clockwise)

Preceding gene: 15672612

Following gene: 15672614

Centisome position: 26.19

GC content: 32.91

Gene sequence:

>702_bases
TTGGTTAGAAATATTGTAATTACAGGTGCAACTGGTGATATTGCTAAAGAAATTGTCAAATCTTTATCTAAAGAAAATGA
CCATTTAATTTTGGTTTCACGTAGCCGTAAGGCTCTGATTGAACGCTATGGTCAGCTTGAAAATGTTACATTACTGACCA
ATGATGAACTTTTGACTAATGAACAATCTTTTGTTGTGGATATTTTGATTAATAATGCTGGTTTTGGTATTTTTAAAGAA
TTCACTGAACTTACTGATGGGGAAATTACAGAACAGTTTGTCATTAATACGTTAATGCCAATCCAGTTGACCAGATTATT
AGAACCGAAAGTTCAATTGATTAATATTGCTTCAATTGCTGGAAAGTTACCAACAGGTAAATCATCAATTTATGTTGCCT
CTAAGGCGGCTTTGATTACATTTTCAGATGCTTTGCGTATGGAAAATCCACAATTAATTGTGACAACTGTGAATACTGGA
CCTGTAAAAACCAAATTTCACAAAGATAATGGAGATTATCTGGAAAAAGTGGGGAAAAATGCAATTTCAGCATCTAAAGT
TGCTGACAAAGTTGTGAATAACTTGGGAAAAAGGAAAAGAGAAATCAATTTACCTTGGACTTTATCCACAGCGGCCAAAT
TGCGAGCTATTTTTCCTTCGCTTTTTGATTTTATATCTGCCAAATTTTTTAATTTCAAATAG

Upstream 100 bases:

>100_bases
AGTGCACGCTATGTTGGACCTTTGGTTGGACAATTGGTGCGTGAGGCACAAACTGTTCATTCCAACACTTTTGTGGTTAA
GGATTTTTACGAGGAAAAAA

Downstream 100 bases:

>100_bases
AATTTTTTTACTGACAGAAGCTTAATGCTATTTGTGTCAGTAAATTATAGAAAAGTTTAGGATTTTATTAAATAAAAGAA
AAATAATCTCTAAACTTAGC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MVRNIVITGATGDIAKEIVKSLSKENDHLILVSRSRKALIERYGQLENVTLLTNDELLTNEQSFVVDILINNAGFGIFKE
FTELTDGEITEQFVINTLMPIQLTRLLEPKVQLINIASIAGKLPTGKSSIYVASKAALITFSDALRMENPQLIVTTVNTG
PVKTKFHKDNGDYLEKVGKNAISASKVADKVVNNLGKRKREINLPWTLSTAAKLRAIFPSLFDFISAKFFNFK

Sequences:

>Translated_233_residues
MVRNIVITGATGDIAKEIVKSLSKENDHLILVSRSRKALIERYGQLENVTLLTNDELLTNEQSFVVDILINNAGFGIFKE
FTELTDGEITEQFVINTLMPIQLTRLLEPKVQLINIASIAGKLPTGKSSIYVASKAALITFSDALRMENPQLIVTTVNTG
PVKTKFHKDNGDYLEKVGKNAISASKVADKVVNNLGKRKREINLPWTLSTAAKLRAIFPSLFDFISAKFFNFK
>Mature_233_residues
MVRNIVITGATGDIAKEIVKSLSKENDHLILVSRSRKALIERYGQLENVTLLTNDELLTNEQSFVVDILINNAGFGIFKE
FTELTDGEITEQFVINTLMPIQLTRLLEPKVQLINIASIAGKLPTGKSSIYVASKAALITFSDALRMENPQLIVTTVNTG
PVKTKFHKDNGDYLEKVGKNAISASKVADKVVNNLGKRKREINLPWTLSTAAKLRAIFPSLFDFISAKFFNFK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=259, Percent_Identity=30.5019305019305, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1786701, Length=239, Percent_Identity=26.3598326359833, Blast_Score=72, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=30.3191489361702, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25855; Mature: 25855

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRNIVITGATGDIAKEIVKSLSKENDHLILVSRSRKALIERYGQLENVTLLTNDELLTN
CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEECCCCEEC
EQSFVVDILINNAGFGIFKEFTELTDGEITEQFVINTLMPIQLTRLLEPKVQLINIASIA
CCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEHHHHH
GKLPTGKSSIYVASKAALITFSDALRMENPQLIVTTVNTGPVKTKFHKDNGDYLEKVGKN
CCCCCCCCEEEEEECEEEEEEHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHCCC
AISASKVADKVVNNLGKRKREINLPWTLSTAAKLRAIFPSLFDFISAKFFNFK
HHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVRNIVITGATGDIAKEIVKSLSKENDHLILVSRSRKALIERYGQLENVTLLTNDELLTN
CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEECCCCEEC
EQSFVVDILINNAGFGIFKEFTELTDGEITEQFVINTLMPIQLTRLLEPKVQLINIASIA
CCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEHHHHH
GKLPTGKSSIYVASKAALITFSDALRMENPQLIVTTVNTGPVKTKFHKDNGDYLEKVGKN
CCCCCCCCEEEEEECEEEEEEHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHCCC
AISASKVADKVVNNLGKRKREINLPWTLSTAAKLRAIFPSLFDFISAKFFNFK
HHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]