Click here to switch to the map view.

The map label for this gene is yfjD

Identifier: 15672589

GI number: 15672589

Start: 596779

End: 597537

Strand: Direct

Name: yfjD

Synonym: L196779

Alternate gene names: 15672589

Gene position: 596779-597537 (Clockwise)

Preceding gene: 15672587

Following gene: 15672592

Centisome position: 25.23

GC content: 37.02

Gene sequence:

>759_bases
ATGGAAATCATCAGTTCAAAAGATAATAAAAAAATTAAAGAAGCAAGAAAATTGCTGACAAAAAAATACCGCAAAAATTC
ATATCTCATCGAAGGATTTCATTTGTTGGAGGAAGCGCTGAAAGCTGGTCGTTCAATAAAGCAAATTTTTGTTGAAGAAA
ATAAACTGACTAAACTGACAGAAATGATTGGGTCTGAAAAATTACTGACAGACTTATCTGTAAATCTGGTCAGTAAAGAA
GTGTTGAAATCTTTAGCTGACAGCGAAAGCCCACAAGGACTGATTGCTGAAGTGACAAAAATTGAAGAAGTCATTGATTT
TTCAGCAGCAAAATTTTTACTTTTAGAAAACGTACAAGACCCAGGAAATGTAGGGACAATGATTAGAACAGCTGATGCGG
CTGGATTTTCGGCTGTTATATTACTTGGCGAAACCGCAGATATTTACAGTCCAAAGGTCATGCGGTCTATGCAAGGCTCA
AATTTTCATTTGCCTCTTGTACGAATGGCTAAAGAAGATTGTTTTGCTCAACTTAAAAAAGCAGGCATTTCAATATTGAC
GACCACGCTGTCAGCAAATTCTGTGTCTTATAAAATAATCAATGAACCACACTTCGCATTGATTATGGGAAATGAAGGGG
CCGGAGTCTCTGACGAAGCCGTTAAAGCTGCTGACAAACTCGTTCATATTGACATGCCAGGACAAGCAGAATCTTTAAAT
GTGGCTGTAGCAGCTGGAATTTTGATGTTTTCATTATAA

Upstream 100 bases:

>100_bases
GTGGCAACAGCTATCTTACACTTCATTTGATTATCAATGCAATGGGATACTGGCAATGTAAAACTTTGTTTCGCCTTACT
GGCTATGATATAATTGGAGA

Downstream 100 bases:

>100_bases
AATTACTGACAAATCAGTCCAAACAACCGAATCTCAAATTGGTAGACAAAAAAATTACTGACAGAACCTCCGTCAGTAAT
TTTTTTGCATTTATATTTAT

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MEIISSKDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALKAGRSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKE
VLKSLADSESPQGLIAEVTKIEEVIDFSAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGS
NFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMPGQAESLN
VAVAAGILMFSL

Sequences:

>Translated_252_residues
MEIISSKDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALKAGRSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKE
VLKSLADSESPQGLIAEVTKIEEVIDFSAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGS
NFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMPGQAESLN
VAVAAGILMFSL
>Mature_252_residues
MEIISSKDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALKAGRSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKE
VLKSLADSESPQGLIAEVTKIEEVIDFSAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGS
NFHLPLVRMAKEDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMPGQAESLN
VAVAAGILMFSL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1790623, Length=239, Percent_Identity=28.8702928870293, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790083, Length=145, Percent_Identity=34.4827586206897, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666840, Length=265, Percent_Identity=25.2830188679245, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27429; Mature: 27429

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIISSKDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALKAGRSIKQIFVEENKLTKLT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
EMIGSEKLLTDLSVNLVSKEVLKSLADSESPQGLIAEVTKIEEVIDFSAAKFLLLENVQD
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRMAKEDCFAQLKK
CCCCCCEEEECCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMPGQAESLN
CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHEEEEECCCCCCHHH
VAVAAGILMFSL
HHHHHHHHHHCC
>Mature Secondary Structure
MEIISSKDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALKAGRSIKQIFVEENKLTKLT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
EMIGSEKLLTDLSVNLVSKEVLKSLADSESPQGLIAEVTKIEEVIDFSAAKFLLLENVQD
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRMAKEDCFAQLKK
CCCCCCEEEECCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMPGQAESLN
CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHEEEEECCCCCCHHH
VAVAAGILMFSL
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]