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The map label for this gene is yfjA

Identifier: 15672582

GI number: 15672582

Start: 589901

End: 590713

Strand: Direct

Name: yfjA

Synonym: L189883

Alternate gene names: 15672582

Gene position: 589901-590713 (Clockwise)

Preceding gene: 15672581

Following gene: 15672583

Centisome position: 24.94

GC content: 34.07

Gene sequence:

>813_bases
TTGAAGTTTGTGCAAGGGGGACTCAATAATTTTGCTAACGAACTTGAAAAAGTCGAAGGTGGATTTTATGGTATTATTGG
TTTACTCTTTCGTCGTCCCTACAAAGTACCAGATGATTTGAAAAATATCAGAGAAAATCTTTTTATTGAAGCAAAAACAT
TACAAAAAGAACTAGACAAGCAGTCAGAAAAAGAGAATAATAATAAAAATCGTTTATCAGCTAGAGCTATCAAAGCACTA
AAATCTGGTCAGTTAGCTATTTTACCGACAGAAACAGTTTACGGTCTCTTTGCAGATGCGATGAATGAAGAAGCAGTCCA
AAAACTCTATTCAGTTAAAGGACGTCCAACAGAAAGAGCTTTAAATATGAATATTTCAAGCTTTGAAGATATTTTAAAAT
ATTCAATCAATCAACCAGTTTATCTCCAAAAAATTGTGGAAGCCTTTCTTCCTGGCCCTTTAACCATTATTTTAGAGGCA
TCTAAAGATGTTCCTGAATGGATTCATATTGGAAAAAGTACTGTTGGTTTTAGAATGCCAAATATTGCAGTAACTCAAAA
AATTATCAAAGAAGTCGGTGTTTTGGTCGGACCTTCTGCCAATTTAAGTGGTTCTAAAAGTCCAAGTTTCTTTGCCGATT
TAAGTCCTGAAATTTTAGAAAATGCCGCAGTCGCTGTTCAAGATGATAGCATCTATGGACTAGATACAACAATCATCGAT
TTGACGCAAGAAAAACCAAAATTACTGCGTCAAGGGGCTGTTACTAAAGAAGAATTACTTAAAAAAGTTCCTGAACTTGG
TCAAATTGAATAA

Upstream 100 bases:

>100_bases
TGAAAATGATTTACGAACAATGTCCTCTTTTTTGCAAGTGCAATTAAAAGATATCAAAACTTTGGTTGAGTCAAACAAGA
TAGACCAAGCTAAAGAAAAT

Downstream 100 bases:

>100_bases
AATAAGCTGAAAAAAGTAATCTAAAAATTTCCGAACATTCTTTGGCAATGATGAGATTTACAAGCCAACTTATTTCAAAA
AAGAGCCTTTAGCCGATATA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein YwlC [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKFVQGGLNNFANELEKVEGGFYGIIGLLFRRPYKVPDDLKNIRENLFIEAKTLQKELDKQSEKENNNKNRLSARAIKAL
KSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILKYSINQPVYLQKIVEAFLPGPLTIILEA
SKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEVGVLVGPSANLSGSKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIID
LTQEKPKLLRQGAVTKEELLKKVPELGQIE

Sequences:

>Translated_270_residues
MKFVQGGLNNFANELEKVEGGFYGIIGLLFRRPYKVPDDLKNIRENLFIEAKTLQKELDKQSEKENNNKNRLSARAIKAL
KSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILKYSINQPVYLQKIVEAFLPGPLTIILEA
SKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEVGVLVGPSANLSGSKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIID
LTQEKPKLLRQGAVTKEELLKKVPELGQIE
>Mature_270_residues
MKFVQGGLNNFANELEKVEGGFYGIIGLLFRRPYKVPDDLKNIRENLFIEAKTLQKELDKQSEKENNNKNRLSARAIKAL
KSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILKYSINQPVYLQKIVEAFLPGPLTIILEA
SKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEVGVLVGPSANLSGSKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIID
LTQEKPKLLRQGAVTKEELLKKVPELGQIE

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (Probable) [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=195, Percent_Identity=24.1025641025641, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=194, Percent_Identity=29.8969072164948, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=218, Percent_Identity=30.7339449541284, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI78707274, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR005145
- InterPro:   IPR004388
- InterPro:   IPR006070
- InterPro:   IPR010923 [H]

Pfam domain/function: PF03481 SUA5; PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 29990; Mature: 29990

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVQGGLNNFANELEKVEGGFYGIIGLLFRRPYKVPDDLKNIRENLFIEAKTLQKELDK
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHHHHHHHHHH
QSEKENNNKNRLSARAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERA
HHHHHCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH
LNMNISSFEDILKYSINQPVYLQKIVEAFLPGPLTIILEASKDVPEWIHIGKSTVGFRMP
HCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCHHCEECC
NIAVTQKIIKEVGVLVGPSANLSGSKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIID
CHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHCCCHHHHCCCCEEEECCCEECCCHHEEE
LTQEKPKLLRQGAVTKEELLKKVPELGQIE
CCHHHHHHHHHCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKFVQGGLNNFANELEKVEGGFYGIIGLLFRRPYKVPDDLKNIRENLFIEAKTLQKELDK
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHHHHHHHHHH
QSEKENNNKNRLSARAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERA
HHHHHCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH
LNMNISSFEDILKYSINQPVYLQKIVEAFLPGPLTIILEASKDVPEWIHIGKSTVGFRMP
HCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCHHCEECC
NIAVTQKIIKEVGVLVGPSANLSGSKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIID
CHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHCCCHHHHCCCCEEEECCCEECCCHHEEE
LTQEKPKLLRQGAVTKEELLKKVPELGQIE
CCHHHHHHHHHCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]