Click here to switch to the map view.

The map label for this gene is rmaJ

Identifier: 15672573

GI number: 15672573

Start: 583404

End: 583835

Strand: Reverse

Name: rmaJ

Synonym: L583407

Alternate gene names: 15672573

Gene position: 583835-583404 (Counterclockwise)

Preceding gene: 15672588

Following gene: 15672571

Centisome position: 24.68

GC content: 28.94

Gene sequence:

>432_bases
ATGACAGACAATATTCTTAGCAAGGAATTATGTTTTCAATTATACATTGCTTCAAAGGAAATCATAAAAAAATATAATTC
TTATTTAAATAGATATTCGCTTACTTATACTGGATTTATCGCTATGTTAGCAATTGAAAACAAGATGACAATAAATAAAT
TAGGCGAAGAACTCTCTTTAGATTCTGGTACATTAAGCCCTCTGCTAAAAAGATTGGAAGCAAAAGGATACATTGTAAGA
AAACGTTCTGATAAAGATGAAAGAAGTGTTGAGTTATTTCTCACAGATAAGGGAGCACAAGTTAAAAAGGAATTACCTTC
TATCTCTCTTGAAATTGGTGACAGTTTAGTTTCTTGCAACGAGAATATTAATTATGACTTACTTCTCTCGCAATTACTTA
CTTTAAATAAAAGTTTGAAAACAGAAATTTAA

Upstream 100 bases:

>100_bases
TGAAATCTCCTTTTTAAATTGTTTACAATATAATTGTACTGAATACAATTACGTTTGACAAATATATAGATTCAGATATA
ATGAAATGATAGGAGAAAAT

Downstream 100 bases:

>100_bases
ATATTTATGCTTATTTATATAAAAAAACCTGACCTAAGTCAGGTTTTTTTATTTATTGTGCATCTTTTACAGCCTGATCA
GATTTTGCTCGAGTATCTTG

Product: transcription regulator

Products: NA

Alternate protein names: Staphylococcal accessory regulator Z [H]

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTDNILSKELCFQLYIASKEIIKKYNSYLNRYSLTYTGFIAMLAIENKMTINKLGEELSLDSGTLSPLLKRLEAKGYIVR
KRSDKDERSVELFLTDKGAQVKKELPSISLEIGDSLVSCNENINYDLLLSQLLTLNKSLKTEI

Sequences:

>Translated_143_residues
MTDNILSKELCFQLYIASKEIIKKYNSYLNRYSLTYTGFIAMLAIENKMTINKLGEELSLDSGTLSPLLKRLEAKGYIVR
KRSDKDERSVELFLTDKGAQVKKELPSISLEIGDSLVSCNENINYDLLLSQLLTLNKSLKTEI
>Mature_142_residues
TDNILSKELCFQLYIASKEIIKKYNSYLNRYSLTYTGFIAMLAIENKMTINKLGEELSLDSGTLSPLLKRLEAKGYIVRK
RSDKDERSVELFLTDKGAQVKKELPSISLEIGDSLVSCNENINYDLLLSQLLTLNKSLKTEI

Specific function: Activates transcription of virulence factors alpha- and beta hemolysin genes (hla and hlb). Also, activates RNAIII expression, a central regulator transcribed from the agr locus [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16262; Mature: 16131

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNILSKELCFQLYIASKEIIKKYNSYLNRYSLTYTGFIAMLAIENKMTINKLGEELSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
DSGTLSPLLKRLEAKGYIVRKRSDKDERSVELFLTDKGAQVKKELPSISLEIGDSLVSCN
CCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCHHHHHCCCCEEECCCHHHHCC
ENINYDLLLSQLLTLNKSLKTEI
CCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDNILSKELCFQLYIASKEIIKKYNSYLNRYSLTYTGFIAMLAIENKMTINKLGEELSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
DSGTLSPLLKRLEAKGYIVRKRSDKDERSVELFLTDKGAQVKKELPSISLEIGDSLVSCN
CCCCHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCHHHHHCCCCEEECCCHHHHCC
ENINYDLLLSQLLTLNKSLKTEI
CCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA