Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is pi103
Identifier: 15672420
GI number: 15672420
Start: 449154
End: 449990
Strand: Reverse
Name: pi103
Synonym: L0250
Alternate gene names: 15672420
Gene position: 449990-449154 (Counterclockwise)
Preceding gene: 15672442
Following gene: 15672419
Centisome position: 19.02
GC content: 35.48
Gene sequence:
>837_bases ATGAAAAAAATACGACTACCTGAAATGATAGATTATTTCAGAAAAGAAAATGGTTGGACAATGAAAGAGTTTGGCGAAAA GCTAGGAAAATCTGAGTCAGCTATTTCTAAATGGATAAAAGGGGTTAGAAGTCCCATGGTTGAAGATTTTGATAAAATGG TCAATCTATTTAATACTGATCCTGATACATTAATGTATGGTGCTTCTGACCTTTCTACAACTCTATCCGAAATAAATAAA ATCAGTTCACAACTTGAAGAACCTCGCCAAAAAGTTGTTTTAAATACTGCAACCAATCAGTTAGACGAGCAAAACCAAGA AAAGAAAAAAGAATCTAAAGTGATTCCAATTAATAAAATACCTGATGATTTGCCACCATATATAAGTAGAAAGATATTAG AGAATTTCGTTATGCCTACAAACACTATGGAATATGAACCTGATGAAGATATGGTAGATGTTCCTATTCTTGGTAGGATA GCGGCCGGACTTCCTCTTGATGCGGTTGAAAATTTCGACGGTACAAGACCAGTACCTGCGCACTTCTTATCATCTGCCCG TGATTATTATTGGTTAATGGTTGATGGGCATAGCATGGAGCCAAAGATTCCGTTTGGATCTTATGTTTTAATTGAAGCTG TTCCTGATGTGACTGACGGTACTATTGGAGCTGTTCTTTTCCAAGATGATTGTCAGGCAACATTAAAAAAAGTTTATCAT GAAATAGATTGCTTGAGACTTGTGTCAATCAACAAAGAATTTAAAGACCAATTTGCTACACAAGACAATCCAGCAGCTGT AATCGGTCAAGCCGTCAAAGTAGAAATTGATTTATAA
Upstream 100 bases:
>100_bases TTGTTTGACTTTATGAGTTAATTATAACCTTAACTGTCCAATTTGTCAAGTTAAAACTTTCCAAATTGACAAGTTTTGTT GTTTGTACTATAATTAGTGT
Downstream 100 bases:
>100_bases TTAAATATACGAGCAATGTCTTGAACCTCGTTAAAAAGGTAAGTAAATAACGTGCGCCATCACAAAACTGGCAAGGAGAA ATTATGGGATTTAAAGAACT
Product: prophage pi1 protein 03
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MKKIRLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPDTLMYGASDLSTTLSEINK ISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKIPDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRI AAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYH EIDCLRLVSINKEFKDQFATQDNPAAVIGQAVKVEIDL
Sequences:
>Translated_278_residues MKKIRLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPDTLMYGASDLSTTLSEINK ISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKIPDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRI AAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYH EIDCLRLVSINKEFKDQFATQDNPAAVIGQAVKVEIDL >Mature_278_residues MKKIRLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTDPDTLMYGASDLSTTLSEINK ISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKIPDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRI AAGLPLDAVENFDGTRPVPAHFLSSARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYH EIDCLRLVSINKEFKDQFATQDNPAAVIGQAVKVEIDL
Specific function: Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, recA interacts with lexA causing an autocatalytic cleavage which disrupts the DNA-binding part of lexA, lea
COG id: COG1974
COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S24 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006199 - InterPro: IPR006200 - InterPro: IPR006197 - InterPro: IPR019759 - InterPro: IPR015927 - InterPro: IPR011056 - InterPro: IPR011991 [H]
Pfam domain/function: PF01726 LexA_DNA_bind; PF00717 Peptidase_S24 [H]
EC number: =3.4.21.88 [H]
Molecular weight: Translated: 31482; Mature: 31482
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIRLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTD CCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC PDTLMYGASDLSTTLSEINKISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKI CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHCCCCCCCCC PDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPA CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHCCCCCCCCHH HFLSSARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYH HHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHH EIDCLRLVSINKEFKDQFATQDNPAAVIGQAVKVEIDL HHHHHHHHHCCHHHHHHHCCCCCCHHHHCCEEEEEECC >Mature Secondary Structure MKKIRLPEMIDYFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDKMVNLFNTD CCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC PDTLMYGASDLSTTLSEINKISSQLEEPRQKVVLNTATNQLDEQNQEKKKESKVIPINKI CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHCCCCCCCCC PDDLPPYISRKILENFVMPTNTMEYEPDEDMVDVPILGRIAAGLPLDAVENFDGTRPVPA CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHCCCCCCCCHH HFLSSARDYYWLMVDGHSMEPKIPFGSYVLIEAVPDVTDGTIGAVLFQDDCQATLKKVYH HHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHH EIDCLRLVSINKEFKDQFATQDNPAAVIGQAVKVEIDL HHHHHHHHHCCHHHHHHHCCCCCCHHHHCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA