Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
---|---|
Accession | NC_002662 |
Length | 2,365,589 |
Click here to switch to the map view.
The map label for this gene is ydjD
Identifier: 15672372
GI number: 15672372
Start: 395797
End: 396423
Strand: Direct
Name: ydjD
Synonym: L195751
Alternate gene names: 15672372
Gene position: 395797-396423 (Clockwise)
Preceding gene: 15672371
Following gene: 15672373
Centisome position: 16.73
GC content: 39.23
Gene sequence:
>627_bases ATGATTGCAACATACAACACAAATGTCGGTGACGTTTTAATGCTTATCACTGCAAATGATAAGGGAGAAAAAGTAAACTT CGAACGTAAGGGAAAAGTAGCTCGTGTTTTTATTGAAGAAACTGGAGCGACGGTTGCTTGGAATATTTTTGAAGCGAAAT CTCTATTGGCTAATTTGTCAGGAAATGGTCAAGTCGTCTTATCATCTGATGATATTGAAACGTTGAACAAAGAGCTTGGT AAATCAGGATTTAGCGATGTTCTTGTTCACGATGCACAACCCAAATTTGTTGTCGCTGAAATTGTTGAAATGGAAGATCA TCCAGATTCAGACCATTTACATATCTGTAAAGTTAATGTTGGTTTTGCCGATCCAGTACAAATTGTTTGTGGTGCTCCAA ACGCAGCTCTTGGCTTAAAAACAGTTGCTGCTTTACCTGGTGCTATGATGCCTAACGGCTCATTGATTTTCCCAGGAGCC CTTCGTGGTGTTCAATCTTACGGAATGCTTTGTTCAGCTCGTGAACTTGAATTACCAAATGCTCCTGAGGTTCGTGGAAT CATTGAATTATCATCAGATTTATCCGCTGGTAAAGCTTTTGATTCAGAAACAATGTGGCAAGCATAA
Upstream 100 bases:
>100_bases GCGAGTGCGAAATAGTATCATCGCAGGACAAGCGTTGATATATTAAGAATTATATTCTATAATAATCAAAGTTAAGAAAT TAAAAGGGAAAAATAAGAAA
Downstream 100 bases:
>100_bases TAATAAAACTGTCAAAATAGTTTATTTTGGCAGTTTTTTTTATCTAAAAAAATAAAATAATTTTTTCACAAAGTTCACAA GCGCTTACAAAAGAAAATAG
Product: hypothetical protein
Products: AMP; diphosphate; L-phenylalanyl-tRNAPhe [C]
Alternate protein names: Partial phenylalanyl-tRNA synthetase; Partial PheRS; pFRS [H]
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLSGNGQVVLSSDDIETLNKELG KSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNVGFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGA LRGVQSYGMLCSARELELPNAPEVRGIIELSSDLSAGKAFDSETMWQA
Sequences:
>Translated_208_residues MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLSGNGQVVLSSDDIETLNKELG KSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNVGFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGA LRGVQSYGMLCSARELELPNAPEVRGIIELSSDLSAGKAFDSETMWQA >Mature_208_residues MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLSGNGQVVLSSDDIETLNKELG KSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNVGFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGA LRGVQSYGMLCSARELELPNAPEVRGIIELSSDLSAGKAFDSETMWQA
Specific function: Unknown
COG id: COG0073
COG function: function code R; EMAP domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=91, Percent_Identity=45.0549450549451, Blast_Score=71, Evalue=6e-14,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR002547 [H]
Pfam domain/function: PF01588 tRNA_bind [H]
EC number: 6.1.1.20 [C]
Molecular weight: Translated: 22173; Mature: 22173
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLS CEEEECCCCCCEEEEEEECCCCCEECHHCCCCEEEEEEECCCCEEEEEHHHHHHHHHHCC GNGQVVLSSDDIETLNKELGKSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNV CCCEEEEECCCHHHHHHHHCCCCCCCEEEECCCCCEEEHHHHHHCCCCCCCCEEEEEEEC GFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGALRGVQSYGMLCSARELELPN CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHCCEECCCCCCCCC APEVRGIIELSSDLSAGKAFDSETMWQA CCCCEEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLS CEEEECCCCCCEEEEEEECCCCCEECHHCCCCEEEEEEECCCCEEEEEHHHHHHHHHHCC GNGQVVLSSDDIETLNKELGKSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNV CCCEEEEECCCHHHHHHHHCCCCCCCEEEECCCCCEEEHHHHHHCCCCCCCCEEEEEEEC GFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGALRGVQSYGMLCSARELELPN CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHCCEECCCCCCCCC APEVRGIIELSSDLSAGKAFDSETMWQA CCCCEEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Mg2+; Zn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.125 {2'-deoxyadenosine} 0.2 {2-chloroadenosine} 0.11 {2-chloroadenosine} 0.009 {ATP}} [C]
Substrates: ATP; @PHEN01.txt*phenylalanine!; tRNAPhe [C]
Specific reaction: ATP + @PHEN01.txt*phenylalanine! + tRNAPhe = AMP + diphosphate + L-phenylalanyl-tRNAPhe [C]
General reaction: Aminoacylation; Esterification [C]
Inhibitor: 3'-Deoxyadenosine 5'-triphosphate; 3'-Methyl adenosine 5'-triphosphate; Zn2+ [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]