Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is ydjD

Identifier: 15672372

GI number: 15672372

Start: 395797

End: 396423

Strand: Direct

Name: ydjD

Synonym: L195751

Alternate gene names: 15672372

Gene position: 395797-396423 (Clockwise)

Preceding gene: 15672371

Following gene: 15672373

Centisome position: 16.73

GC content: 39.23

Gene sequence:

>627_bases
ATGATTGCAACATACAACACAAATGTCGGTGACGTTTTAATGCTTATCACTGCAAATGATAAGGGAGAAAAAGTAAACTT
CGAACGTAAGGGAAAAGTAGCTCGTGTTTTTATTGAAGAAACTGGAGCGACGGTTGCTTGGAATATTTTTGAAGCGAAAT
CTCTATTGGCTAATTTGTCAGGAAATGGTCAAGTCGTCTTATCATCTGATGATATTGAAACGTTGAACAAAGAGCTTGGT
AAATCAGGATTTAGCGATGTTCTTGTTCACGATGCACAACCCAAATTTGTTGTCGCTGAAATTGTTGAAATGGAAGATCA
TCCAGATTCAGACCATTTACATATCTGTAAAGTTAATGTTGGTTTTGCCGATCCAGTACAAATTGTTTGTGGTGCTCCAA
ACGCAGCTCTTGGCTTAAAAACAGTTGCTGCTTTACCTGGTGCTATGATGCCTAACGGCTCATTGATTTTCCCAGGAGCC
CTTCGTGGTGTTCAATCTTACGGAATGCTTTGTTCAGCTCGTGAACTTGAATTACCAAATGCTCCTGAGGTTCGTGGAAT
CATTGAATTATCATCAGATTTATCCGCTGGTAAAGCTTTTGATTCAGAAACAATGTGGCAAGCATAA

Upstream 100 bases:

>100_bases
GCGAGTGCGAAATAGTATCATCGCAGGACAAGCGTTGATATATTAAGAATTATATTCTATAATAATCAAAGTTAAGAAAT
TAAAAGGGAAAAATAAGAAA

Downstream 100 bases:

>100_bases
TAATAAAACTGTCAAAATAGTTTATTTTGGCAGTTTTTTTTATCTAAAAAAATAAAATAATTTTTTCACAAAGTTCACAA
GCGCTTACAAAAGAAAATAG

Product: hypothetical protein

Products: AMP; diphosphate; L-phenylalanyl-tRNAPhe [C]

Alternate protein names: Partial phenylalanyl-tRNA synthetase; Partial PheRS; pFRS [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLSGNGQVVLSSDDIETLNKELG
KSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNVGFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGA
LRGVQSYGMLCSARELELPNAPEVRGIIELSSDLSAGKAFDSETMWQA

Sequences:

>Translated_208_residues
MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLSGNGQVVLSSDDIETLNKELG
KSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNVGFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGA
LRGVQSYGMLCSARELELPNAPEVRGIIELSSDLSAGKAFDSETMWQA
>Mature_208_residues
MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLSGNGQVVLSSDDIETLNKELG
KSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNVGFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGA
LRGVQSYGMLCSARELELPNAPEVRGIIELSSDLSAGKAFDSETMWQA

Specific function: Unknown

COG id: COG0073

COG function: function code R; EMAP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788006, Length=91, Percent_Identity=45.0549450549451, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR002547 [H]

Pfam domain/function: PF01588 tRNA_bind [H]

EC number: 6.1.1.20 [C]

Molecular weight: Translated: 22173; Mature: 22173

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLS
CEEEECCCCCCEEEEEEECCCCCEECHHCCCCEEEEEEECCCCEEEEEHHHHHHHHHHCC
GNGQVVLSSDDIETLNKELGKSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNV
CCCEEEEECCCHHHHHHHHCCCCCCCEEEECCCCCEEEHHHHHHCCCCCCCCEEEEEEEC
GFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGALRGVQSYGMLCSARELELPN
CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHCCEECCCCCCCCC
APEVRGIIELSSDLSAGKAFDSETMWQA
CCCCEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIATYNTNVGDVLMLITANDKGEKVNFERKGKVARVFIEETGATVAWNIFEAKSLLANLS
CEEEECCCCCCEEEEEEECCCCCEECHHCCCCEEEEEEECCCCEEEEEHHHHHHHHHHCC
GNGQVVLSSDDIETLNKELGKSGFSDVLVHDAQPKFVVAEIVEMEDHPDSDHLHICKVNV
CCCEEEEECCCHHHHHHHHCCCCCCCEEEECCCCCEEEHHHHHHCCCCCCCCEEEEEEEC
GFADPVQIVCGAPNAALGLKTVAALPGAMMPNGSLIFPGALRGVQSYGMLCSARELELPN
CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHCCEECCCCCCCCC
APEVRGIIELSSDLSAGKAFDSETMWQA
CCCCEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mg2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.125 {2'-deoxyadenosine} 0.2 {2-chloroadenosine} 0.11 {2-chloroadenosine} 0.009 {ATP}} [C]

Substrates: ATP; @PHEN01.txt*phenylalanine!; tRNAPhe [C]

Specific reaction: ATP + @PHEN01.txt*phenylalanine! + tRNAPhe = AMP + diphosphate + L-phenylalanyl-tRNAPhe [C]

General reaction: Aminoacylation; Esterification [C]

Inhibitor: 3'-Deoxyadenosine 5'-triphosphate; 3'-Methyl adenosine 5'-triphosphate; Zn2+ [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]