Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
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Accession | NC_002662 |
Length | 2,365,589 |
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The map label for this gene is pbp1B
Identifier: 15672368
GI number: 15672368
Start: 391435
End: 393840
Strand: Direct
Name: pbp1B
Synonym: L191431
Alternate gene names: 15672368
Gene position: 391435-393840 (Clockwise)
Preceding gene: 15672364
Following gene: 15672370
Centisome position: 16.55
GC content: 36.78
Gene sequence:
>2406_bases ATGAAAAAATCCTCAATTGACTCGCAAGAAGAAGCACGTGCGCGTTTAAAAGAAAAAATGGAAAATAAGCGGCGGAAACA AAGTAAGTCTCTGTCCAAAAATCCTAAAGATAATGATGAAAAATCGGGTTGGTCAATCACTTTTAAGGTGGTCCGCGGAC TAATTGTAATTTTTGGAATAATTTTTGCTTTAGTGGGTGTCTTTGGTGCGGCGACAGGTGTAGGCTATTTTGCTCGATTG GTTGAGCAAACGAAGACACCAAATAAAACGGAAATGCTTGCAAAAATTAATGATATTCATGGCGTTTCTGTCATTAATTA TAGTAATGGTCAAGCAATTTCGGATATCTCTAGTGATTTGGTGCGTGTTACCGTCAAAAGTGACGAGATTTCTCCTAATG TTAAAAATGCTTTAATTGCAACAGAAGATGATAGCTTTAAAACGAATAAGGGCGTGGTTCCTAAGGCAGTTGTTCGTGGA ATTCTTGGTTCAGTAGGTGGTGGCACAAGTTCTGGTGGTTCAACCCTTACCCAACAGTTAATTAAACAACAAGTTTTAGG AGATAGTGTTACCTTCCAACGTAAAGCTAGTGAAATTGTCTATGCTCTTAAACTTAATAGCTACTTGAGTAAAGACCAAA TTTTGACTGATTATTTAAATGTCTCACCTTTTGGGCGAAATAATAAAGGACAAAATATTGCAGGGATTCAAGAAGCTTCT CTTGGTATATTTGGAAAATCTGCTAAGGATTTAACAATACCTGAGGCTGCTTTTATTGCTGGGTTGCCACAAAGTCCTAT CGTGTATTCTCCTTATGCGGCTGATGGTTCTCTAAAGTCAAAAGAAAACATGAGTTACGGTCTTGAACGTCAAAAAGAAG TCTTGTTTTATCTTTATCGTGGGGGCTATATTTCAGAAGCTGATTACAAGAAATACAAAGCTTATGATATTTCAACAGAA TTTTTACAACCAGGAGTAGCTCAATCACAAGAACATGGTTATTTATATAATGTTGTTTATAATGAAGCAATTACTGATAT CTATAATTATTTGATTAAGCGAGATAAAGTTTCGGCAACTGATTTAGGAAATGATAGTACTAAACAACGTTATCGAGAAT TAGCTGAACAGTCATTGCAAAACGGTGGTTATACAGTAACTACAACTATCAATCAACAAGTATATGATGCAATGCAAAAT GCCGTAACTAATTACAGTGGTTTGATGCAAGACGGTACGGGTCTTATTCAAACTGGTAATGTCTTAATGGATAATAAAAC AGGGGCTGTTTATGGCTTTATTGGCGGTTTGGATTTTTCACAAAGCCAAGTAAACCATGCTTTTGATACTAAACGTTCAC CTGGTTCTTCAATCAAACCAATACTAGCTTATGGACCGGCAATTGACATGGGCTTGATGGGTTCTGCAAGTGTTCTATCT AACTATCCCGCAAAATATTCGAGTGGGCAAGACATCGAACACGTCGGCAATAAGGGAACGGAGATGATGCCATTTTCAGA AGCCTTGAATGTTTCTTATAATATTCCTGCTTATTGGACCTATCAAACGATTTTGAATAAAGGAAAATCTGTTGAACCTT ACATGACGAAGATGGGATATGATGTTGCAGATTATTCTGTAGAGTCACTTCCTCTTGGAGGAGGAATTGATCCAACGGTG GTTCAACATACGAATGGTTATCAAACTTTAGCCAATGGTGGAAAATATGAGCCTTGGTATATTGTTGATAGTATCAAAGA TGATACGGGAAATGTAATTTATCAACATCAAAGTACTGGGGGAACTCAAGTTTATTCAGAAGCAACATCTACCATTATGG AATATATGCTTCAAGATGCTATTAAATCTCAAAAAACAAGTAAGTTTTATGGTGAGTTACAAAGCCTTAATTCTTCTCTT GCAACTAATGTTCAATGGGCTGGTAAAACAGGAACAACTGATAATTATACAGACGTTTGGATGATGCTTTCGACACCTTC AGTGACACTTGGTAGTTGGGCTGGTCACGATGACAATTCTGCAATGTCTCAAAATTCAGGTTTTATTAATAACGCAAAAT TTACAGCTAATTTGGTGAATGCAATTAATGCTGCCGATCCAAATATTTTCGGACCTGGTCAAAAATTTACTGACCCTAAT AGTGATCCAAATGTGACTAAGAGTAAAGTATTAGTTTCTACGGGTGAAAAACCAGGAAAAGTTAATGTTAAATTATCAAA TGGTAAGACACAAGAGGTTAATCTCGGTGGAGACACTACGACAAGCTTCTGGGCTACAAAGTCTGGTGCCCCTACAACCA CATATGATTTTTCTATTGGTGGTTCGGCAAGTGATATAGCTGCTGGTTGGAAAAAGATATTGCCTAATTATAACTTTGGT CAATAA
Upstream 100 bases:
>100_bases AAAGTAAAAAAATTAACAGCACTGTTTTACATTATAACAAATTAATAAAAAAAATTCTGAAAGTGGCGAAAAATTATTTT AAATTTGATATAATAAAGGC
Downstream 100 bases:
>100_bases AATACAAAAAATCACTAGGATAGGTTTCCTAGTGATTTTTTCTTTTGTTTTTTAAATTTAATAGTTTTTAATTTCAGCTA CTTTTTCAGTACTAAGTGAT
Product: penicillin-binding protein 1B
Products: NA
Alternate protein names: PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGIIFALVGVFGAATGVGYFARL VEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDLVRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRG ILGSVGGGTSSGGSTLTQQLIKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYRGGYISEADYKKYKAYDISTE FLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSATDLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQN AVTNYSGLMQDGTGLIQTGNVLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGYDVADYSVESLPLGGGIDPTV VQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTGGTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSL ATNVQWAGKTGTTDNYTDVWMMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIGGSASDIAAGWKKILPNYNFG Q
Sequences:
>Translated_801_residues MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGIIFALVGVFGAATGVGYFARL VEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDLVRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRG ILGSVGGGTSSGGSTLTQQLIKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYRGGYISEADYKKYKAYDISTE FLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSATDLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQN AVTNYSGLMQDGTGLIQTGNVLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGYDVADYSVESLPLGGGIDPTV VQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTGGTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSL ATNVQWAGKTGTTDNYTDVWMMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIGGSASDIAAGWKKILPNYNFG Q >Mature_801_residues MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGIIFALVGVFGAATGVGYFARL VEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDLVRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRG ILGSVGGGTSSGGSTLTQQLIKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYRGGYISEADYKKYKAYDISTE FLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSATDLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQN AVTNYSGLMQDGTGLIQTGNVLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGYDVADYSVESLPLGGGIDPTV VQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTGGTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSL ATNVQWAGKTGTTDNYTDVWMMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIGGSASDIAAGWKKILPNYNFG Q
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=653, Percent_Identity=24.8085758039816, Blast_Score=118, Evalue=1e-27, Organism=Escherichia coli, GI87082258, Length=284, Percent_Identity=30.9859154929577, Blast_Score=112, Evalue=9e-26, Organism=Escherichia coli, GI1788867, Length=621, Percent_Identity=25.1207729468599, Blast_Score=109, Evalue=8e-25, Organism=Escherichia coli, GI1789601, Length=159, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 86966; Mature: 86966
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: PS00318 HMG_COA_REDUCTASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHH IFALVGVFGAATGVGYFARLVEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCE VRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRGILGSVGGGTSSGGSTLTQQL EEEEEECCCCCCCHHCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH IKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS HHHHHHCCCCHHHHHHHHEEEEEEHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYR CCEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCHHHHHEEEEEEEC GGYISEADYKKYKAYDISTEFLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSAT CCEECCCCCCHHEEEECCHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCC DLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQNAVTNYSGLMQDGTGLIQTGN CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEECC VLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS EEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGY CCCCCCCCCCCHHHHCCCCCCCCCHHHHCCEEECCCCEEEHHHHHCCCCCCCHHHHHCCC DVADYSVESLPLGGGIDPTVVQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTG CHHCCCHHCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCC GTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSLATNVQWAGKTGTTDNYTDVW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEE MMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN EEEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIG CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCCCEEEEEECC GSASDIAAGWKKILPNYNFGQ CCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHH IFALVGVFGAATGVGYFARLVEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCE VRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRGILGSVGGGTSSGGSTLTQQL EEEEEECCCCCCCHHCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH IKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS HHHHHHCCCCHHHHHHHHEEEEEEHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYR CCEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCHHHHHEEEEEEEC GGYISEADYKKYKAYDISTEFLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSAT CCEECCCCCCHHEEEECCHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCC DLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQNAVTNYSGLMQDGTGLIQTGN CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEECC VLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS EEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGY CCCCCCCCCCCHHHHCCCCCCCCCHHHHCCEEECCCCEEEHHHHHCCCCCCCHHHHHCCC DVADYSVESLPLGGGIDPTVVQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTG CHHCCCHHCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCC GTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSLATNVQWAGKTGTTDNYTDVW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEE MMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN EEEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIG CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCCCEEEEEECC GSASDIAAGWKKILPNYNFGQ CCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA