Definition Lactococcus lactis subsp. lactis Il1403, complete genome.
Accession NC_002662
Length 2,365,589

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The map label for this gene is pbp1B

Identifier: 15672368

GI number: 15672368

Start: 391435

End: 393840

Strand: Direct

Name: pbp1B

Synonym: L191431

Alternate gene names: 15672368

Gene position: 391435-393840 (Clockwise)

Preceding gene: 15672364

Following gene: 15672370

Centisome position: 16.55

GC content: 36.78

Gene sequence:

>2406_bases
ATGAAAAAATCCTCAATTGACTCGCAAGAAGAAGCACGTGCGCGTTTAAAAGAAAAAATGGAAAATAAGCGGCGGAAACA
AAGTAAGTCTCTGTCCAAAAATCCTAAAGATAATGATGAAAAATCGGGTTGGTCAATCACTTTTAAGGTGGTCCGCGGAC
TAATTGTAATTTTTGGAATAATTTTTGCTTTAGTGGGTGTCTTTGGTGCGGCGACAGGTGTAGGCTATTTTGCTCGATTG
GTTGAGCAAACGAAGACACCAAATAAAACGGAAATGCTTGCAAAAATTAATGATATTCATGGCGTTTCTGTCATTAATTA
TAGTAATGGTCAAGCAATTTCGGATATCTCTAGTGATTTGGTGCGTGTTACCGTCAAAAGTGACGAGATTTCTCCTAATG
TTAAAAATGCTTTAATTGCAACAGAAGATGATAGCTTTAAAACGAATAAGGGCGTGGTTCCTAAGGCAGTTGTTCGTGGA
ATTCTTGGTTCAGTAGGTGGTGGCACAAGTTCTGGTGGTTCAACCCTTACCCAACAGTTAATTAAACAACAAGTTTTAGG
AGATAGTGTTACCTTCCAACGTAAAGCTAGTGAAATTGTCTATGCTCTTAAACTTAATAGCTACTTGAGTAAAGACCAAA
TTTTGACTGATTATTTAAATGTCTCACCTTTTGGGCGAAATAATAAAGGACAAAATATTGCAGGGATTCAAGAAGCTTCT
CTTGGTATATTTGGAAAATCTGCTAAGGATTTAACAATACCTGAGGCTGCTTTTATTGCTGGGTTGCCACAAAGTCCTAT
CGTGTATTCTCCTTATGCGGCTGATGGTTCTCTAAAGTCAAAAGAAAACATGAGTTACGGTCTTGAACGTCAAAAAGAAG
TCTTGTTTTATCTTTATCGTGGGGGCTATATTTCAGAAGCTGATTACAAGAAATACAAAGCTTATGATATTTCAACAGAA
TTTTTACAACCAGGAGTAGCTCAATCACAAGAACATGGTTATTTATATAATGTTGTTTATAATGAAGCAATTACTGATAT
CTATAATTATTTGATTAAGCGAGATAAAGTTTCGGCAACTGATTTAGGAAATGATAGTACTAAACAACGTTATCGAGAAT
TAGCTGAACAGTCATTGCAAAACGGTGGTTATACAGTAACTACAACTATCAATCAACAAGTATATGATGCAATGCAAAAT
GCCGTAACTAATTACAGTGGTTTGATGCAAGACGGTACGGGTCTTATTCAAACTGGTAATGTCTTAATGGATAATAAAAC
AGGGGCTGTTTATGGCTTTATTGGCGGTTTGGATTTTTCACAAAGCCAAGTAAACCATGCTTTTGATACTAAACGTTCAC
CTGGTTCTTCAATCAAACCAATACTAGCTTATGGACCGGCAATTGACATGGGCTTGATGGGTTCTGCAAGTGTTCTATCT
AACTATCCCGCAAAATATTCGAGTGGGCAAGACATCGAACACGTCGGCAATAAGGGAACGGAGATGATGCCATTTTCAGA
AGCCTTGAATGTTTCTTATAATATTCCTGCTTATTGGACCTATCAAACGATTTTGAATAAAGGAAAATCTGTTGAACCTT
ACATGACGAAGATGGGATATGATGTTGCAGATTATTCTGTAGAGTCACTTCCTCTTGGAGGAGGAATTGATCCAACGGTG
GTTCAACATACGAATGGTTATCAAACTTTAGCCAATGGTGGAAAATATGAGCCTTGGTATATTGTTGATAGTATCAAAGA
TGATACGGGAAATGTAATTTATCAACATCAAAGTACTGGGGGAACTCAAGTTTATTCAGAAGCAACATCTACCATTATGG
AATATATGCTTCAAGATGCTATTAAATCTCAAAAAACAAGTAAGTTTTATGGTGAGTTACAAAGCCTTAATTCTTCTCTT
GCAACTAATGTTCAATGGGCTGGTAAAACAGGAACAACTGATAATTATACAGACGTTTGGATGATGCTTTCGACACCTTC
AGTGACACTTGGTAGTTGGGCTGGTCACGATGACAATTCTGCAATGTCTCAAAATTCAGGTTTTATTAATAACGCAAAAT
TTACAGCTAATTTGGTGAATGCAATTAATGCTGCCGATCCAAATATTTTCGGACCTGGTCAAAAATTTACTGACCCTAAT
AGTGATCCAAATGTGACTAAGAGTAAAGTATTAGTTTCTACGGGTGAAAAACCAGGAAAAGTTAATGTTAAATTATCAAA
TGGTAAGACACAAGAGGTTAATCTCGGTGGAGACACTACGACAAGCTTCTGGGCTACAAAGTCTGGTGCCCCTACAACCA
CATATGATTTTTCTATTGGTGGTTCGGCAAGTGATATAGCTGCTGGTTGGAAAAAGATATTGCCTAATTATAACTTTGGT
CAATAA

Upstream 100 bases:

>100_bases
AAAGTAAAAAAATTAACAGCACTGTTTTACATTATAACAAATTAATAAAAAAAATTCTGAAAGTGGCGAAAAATTATTTT
AAATTTGATATAATAAAGGC

Downstream 100 bases:

>100_bases
AATACAAAAAATCACTAGGATAGGTTTCCTAGTGATTTTTTCTTTTGTTTTTTAAATTTAATAGTTTTTAATTTCAGCTA
CTTTTTCAGTACTAAGTGAT

Product: penicillin-binding protein 1B

Products: NA

Alternate protein names: PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]

Number of amino acids: Translated: 801; Mature: 801

Protein sequence:

>801_residues
MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGIIFALVGVFGAATGVGYFARL
VEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDLVRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRG
ILGSVGGGTSSGGSTLTQQLIKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS
LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYRGGYISEADYKKYKAYDISTE
FLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSATDLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQN
AVTNYSGLMQDGTGLIQTGNVLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS
NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGYDVADYSVESLPLGGGIDPTV
VQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTGGTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSL
ATNVQWAGKTGTTDNYTDVWMMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN
SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIGGSASDIAAGWKKILPNYNFG
Q

Sequences:

>Translated_801_residues
MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGIIFALVGVFGAATGVGYFARL
VEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDLVRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRG
ILGSVGGGTSSGGSTLTQQLIKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS
LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYRGGYISEADYKKYKAYDISTE
FLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSATDLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQN
AVTNYSGLMQDGTGLIQTGNVLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS
NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGYDVADYSVESLPLGGGIDPTV
VQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTGGTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSL
ATNVQWAGKTGTTDNYTDVWMMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN
SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIGGSASDIAAGWKKILPNYNFG
Q
>Mature_801_residues
MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGIIFALVGVFGAATGVGYFARL
VEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDLVRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRG
ILGSVGGGTSSGGSTLTQQLIKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS
LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYRGGYISEADYKKYKAYDISTE
FLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSATDLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQN
AVTNYSGLMQDGTGLIQTGNVLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS
NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGYDVADYSVESLPLGGGIDPTV
VQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTGGTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSL
ATNVQWAGKTGTTDNYTDVWMMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN
SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIGGSASDIAAGWKKILPNYNFG
Q

Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal

COG id: COG0744

COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transpeptidase family [H]

Homologues:

Organism=Escherichia coli, GI1786343, Length=653, Percent_Identity=24.8085758039816, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082258, Length=284, Percent_Identity=30.9859154929577, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1788867, Length=621, Percent_Identity=25.1207729468599, Blast_Score=109, Evalue=8e-25,
Organism=Escherichia coli, GI1789601, Length=159, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001264
- InterPro:   IPR011816
- InterPro:   IPR001460 [H]

Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]

EC number: 2.4.1.129; 3.4.-.- [C]

Molecular weight: Translated: 86966; Mature: 86966

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00318 HMG_COA_REDUCTASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHH
IFALVGVFGAATGVGYFARLVEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCE
VRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRGILGSVGGGTSSGGSTLTQQL
EEEEEECCCCCCCHHCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
IKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS
HHHHHHCCCCHHHHHHHHEEEEEEHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC
LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYR
CCEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCHHHHHEEEEEEEC
GGYISEADYKKYKAYDISTEFLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSAT
CCEECCCCCCHHEEEECCHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCC
DLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQNAVTNYSGLMQDGTGLIQTGN
CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEECC
VLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS
EEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGY
CCCCCCCCCCCHHHHCCCCCCCCCHHHHCCEEECCCCEEEHHHHHCCCCCCCHHHHHCCC
DVADYSVESLPLGGGIDPTVVQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTG
CHHCCCHHCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCC
GTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSLATNVQWAGKTGTTDNYTDVW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEE
MMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN
EEEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIG
CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCCCEEEEEECC
GSASDIAAGWKKILPNYNFGQ
CCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKSSIDSQEEARARLKEKMENKRRKQSKSLSKNPKDNDEKSGWSITFKVVRGLIVIFGI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHH
IFALVGVFGAATGVGYFARLVEQTKTPNKTEMLAKINDIHGVSVINYSNGQAISDISSDL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCE
VRVTVKSDEISPNVKNALIATEDDSFKTNKGVVPKAVVRGILGSVGGGTSSGGSTLTQQL
EEEEEECCCCCCCHHCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
IKQQVLGDSVTFQRKASEIVYALKLNSYLSKDQILTDYLNVSPFGRNNKGQNIAGIQEAS
HHHHHHCCCCHHHHHHHHEEEEEEHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC
LGIFGKSAKDLTIPEAAFIAGLPQSPIVYSPYAADGSLKSKENMSYGLERQKEVLFYLYR
CCEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCHHHHHEEEEEEEC
GGYISEADYKKYKAYDISTEFLQPGVAQSQEHGYLYNVVYNEAITDIYNYLIKRDKVSAT
CCEECCCCCCHHEEEECCHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCC
DLGNDSTKQRYRELAEQSLQNGGYTVTTTINQQVYDAMQNAVTNYSGLMQDGTGLIQTGN
CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEECC
VLMDNKTGAVYGFIGGLDFSQSQVNHAFDTKRSPGSSIKPILAYGPAIDMGLMGSASVLS
EEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
NYPAKYSSGQDIEHVGNKGTEMMPFSEALNVSYNIPAYWTYQTILNKGKSVEPYMTKMGY
CCCCCCCCCCCHHHHCCCCCCCCCHHHHCCEEECCCCEEEHHHHHCCCCCCCHHHHHCCC
DVADYSVESLPLGGGIDPTVVQHTNGYQTLANGGKYEPWYIVDSIKDDTGNVIYQHQSTG
CHHCCCHHCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCC
GTQVYSEATSTIMEYMLQDAIKSQKTSKFYGELQSLNSSLATNVQWAGKTGTTDNYTDVW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEE
MMLSTPSVTLGSWAGHDDNSAMSQNSGFINNAKFTANLVNAINAADPNIFGPGQKFTDPN
EEEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SDPNVTKSKVLVSTGEKPGKVNVKLSNGKTQEVNLGGDTTTSFWATKSGAPTTTYDFSIG
CCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCCCCCEEEECCCCCCEEEEEECC
GSASDIAAGWKKILPNYNFGQ
CCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA