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The map label for this gene is tra904D

Identifier: 15672352

GI number: 15672352

Start: 373520

End: 374281

Strand: Direct

Name: tra904D

Synonym: L0460

Alternate gene names: 15672352

Gene position: 373520-374281 (Clockwise)

Preceding gene: 15672351

Following gene: 15672353

Centisome position: 15.79

GC content: 38.85

Gene sequence:

>762_bases
ATGCATCGTCGTCCTTCAAAACAACAAGTGGAGAGAGAAATTCTCTCAGAGAAGATAAAAGCTGTCTTTCATGAGCATAA
GGGACGCTATGGTGCGGTTAGAATTACCAAGGTACTTCATAATACTGGTATTATGACCAACACGAAACGTGTTGGGAAAC
TGATGCACTTGATGGGACTTTATGCCAAGGGAAGCCGTTATAAATATAAACATTACAACAGAAAAGGAGCTTCGCTTTCA
AGACCCAATTTAATTAATCAGATCTTTAAAGCAACAGCTCCTAATAAAGTATGGCTGGGAGACATGACCTATATCCCTAC
CAAAGAAGGCACCTTATACTTAGCCGTGAATATCGACGTTTTTTCACGTAAGATTGTAGGCTGGTCAATATCTTCACGGA
TGCAAGATAAACTGGTGAGGGATTGCTTCTTACAAGCTTGTGGGAAAGAACATCCTCAGCCTGGCTTGATTGTCCATACT
GATCAAGGGAGTCAATATACAAGCTCTCGTTATCAATCTACTCTTCGTCAAGTCGGTGCTCAATCTAGCATGAGTCGTAA
AGGAAATCCCTATGACAATGCAATGATGGAGTCTTTTTATAAGACGCTAAAGAGGGAGCTTATTAATGATGCTCATTTTG
AGACAAGAGCTGAGGCTACTCAAGAAATATTTAAATACATTGAGACCTATTACAATACAAAAAGGATGCATTCAGGTCTT
GATTACAAGTCTCCAAAAGACTTTGAAAAATATAATTCTTAA

Upstream 100 bases:

>100_bases
AGTAAAACGTTTTGAATTTCTCTTGAAACATCATGGGAAGATAAAAATTAAGCATGCAGTAAAAGTTCTTAAGGTTTCTC
GCTCAGGTTTCTATGAATAC

Downstream 100 bases:

>100_bases
ATTCTCTTAACTCCGTGTCTAGTTTTTCGTTGACTTTCCATCGGAGGTCTTTTCTTATGGTCAAATATTCCATAGAATTA
AAACAACGCATTATTCAAGA

Product: transposase of IS904D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSISSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS

Sequences:

>Translated_253_residues
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSISSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS
>Mature_253_residues
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSISSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSSRYQSTLRQVGAQSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=219, Percent_Identity=34.703196347032, Blast_Score=125, Evalue=3e-29,
Organism=Escherichia coli, GI1788405, Length=250, Percent_Identity=42, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787263, Length=250, Percent_Identity=42, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1786753, Length=250, Percent_Identity=42, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1786570, Length=250, Percent_Identity=42, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1786490, Length=250, Percent_Identity=42, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1789981, Length=234, Percent_Identity=36.3247863247863, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 29376; Mature: 29376

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
YAKGSRYKYKHYNRKGASLSRPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDV
HHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCEEEEEEEHHH
FSRKIVGWSISSRMQDKLVRDCFLQACGKEHPQPGLIVHTDQGSQYTSSRYQSTLRQVGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
QSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DYKSPKDFEKYNS
CCCCCCCHHHCCC
>Mature Secondary Structure
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
YAKGSRYKYKHYNRKGASLSRPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDV
HHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCEEEEEEEHHH
FSRKIVGWSISSRMQDKLVRDCFLQACGKEHPQPGLIVHTDQGSQYTSSRYQSTLRQVGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
QSSMSRKGNPYDNAMMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DYKSPKDFEKYNS
CCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]