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The map label for this gene is ybjA

Identifier: 15672171

GI number: 15672171

Start: 193029

End: 193457

Strand: Direct

Name: ybjA

Synonym: L192996

Alternate gene names: 15672171

Gene position: 193029-193457 (Clockwise)

Preceding gene: 15672164

Following gene: 15672175

Centisome position: 8.16

GC content: 38.0

Gene sequence:

>429_bases
ATGGAAAAAGAAAAACTTAAAAAGAAATTAAGCCTACTTGCTTATCGTGTTACCCAAGAAAATGGGACAGAGGCCCCTTT
TGCTAATGAGTTTGATGATTTCTTTGAACAAGGATTGTATGTTGATGTTGTGAGTGGTGAAGCCCTATTTACAAGTTTAG
ATAAATATCAATCAGGCTGCGGTTGGCCAGCCTTTACACAACCGATTGATAAAGGAGTTGTCAAAGAAAAACGAGATAAA
TCTCTATTTATGGAACGTACAGAAGTTCGTTCTAGTAATGCTGACAGTCATTTGGGTCATGTTTTTACTGACGGCCCCCT
AGATAAGGGAGACTTGCGTTATTGTATTAATTCTGCCGCTTTGCGTTTCGTTCCTTTTGACCAATTAGAAGCAGAGGGTT
ATGGAGAGTACGTAAAATACTTTTCATAA

Upstream 100 bases:

>100_bases
AGCCTAAATGTAAAGGTGTCAAGCCGTTTGTCAACCAAGTTTACACTAGTGTCAAAAAAGTTGACAGTCAATGGTCACAT
GTAGGAAAGGAAAATTGCTG

Downstream 100 bases:

>100_bases
TTCTATACACTCAATAAAAAAGTTACTGACAGACATTTTAATCGATGAAAAATGCTTCTGTCAGTAACTTTTTATAAAAC
AAAAGAAAAATTCTGATGTT

Product: methionine sulfoxide reductase B

Products: NA

Alternate protein names: Peptide-methionine (R)-S-oxide reductase

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MEKEKLKKKLSLLAYRVTQENGTEAPFANEFDDFFEQGLYVDVVSGEALFTSLDKYQSGCGWPAFTQPIDKGVVKEKRDK
SLFMERTEVRSSNADSHLGHVFTDGPLDKGDLRYCINSAALRFVPFDQLEAEGYGEYVKYFS

Sequences:

>Translated_142_residues
MEKEKLKKKLSLLAYRVTQENGTEAPFANEFDDFFEQGLYVDVVSGEALFTSLDKYQSGCGWPAFTQPIDKGVVKEKRDK
SLFMERTEVRSSNADSHLGHVFTDGPLDKGDLRYCINSAALRFVPFDQLEAEGYGEYVKYFS
>Mature_142_residues
MEKEKLKKKLSLLAYRVTQENGTEAPFANEFDDFFEQGLYVDVVSGEALFTSLDKYQSGCGWPAFTQPIDKGVVKEKRDK
SLFMERTEVRSSNADSHLGHVFTDGPLDKGDLRYCINSAALRFVPFDQLEAEGYGEYVKYFS

Specific function: Unknown

COG id: COG0229

COG function: function code O; Conserved domain frequently associated with peptide methionine sulfoxide reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the msrB Met sulfoxide reductase family

Homologues:

Organism=Homo sapiens, GI301336164, Length=125, Percent_Identity=45.6, Blast_Score=111, Evalue=2e-25,
Organism=Homo sapiens, GI301336162, Length=125, Percent_Identity=45.6, Blast_Score=111, Evalue=2e-25,
Organism=Homo sapiens, GI73089054, Length=125, Percent_Identity=45.6, Blast_Score=111, Evalue=2e-25,
Organism=Homo sapiens, GI37620216, Length=125, Percent_Identity=45.6, Blast_Score=111, Evalue=2e-25,
Organism=Homo sapiens, GI117606353, Length=133, Percent_Identity=40.6015037593985, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1788077, Length=121, Percent_Identity=46.2809917355372, Blast_Score=118, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI115532676, Length=125, Percent_Identity=44.8, Blast_Score=113, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17553450, Length=125, Percent_Identity=44.8, Blast_Score=113, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6319816, Length=124, Percent_Identity=31.4516129032258, Blast_Score=71, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221378664, Length=125, Percent_Identity=50.4, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI221378662, Length=132, Percent_Identity=48.4848484848485, Blast_Score=127, Evalue=3e-30,
Organism=Drosophila melanogaster, GI45553335, Length=128, Percent_Identity=48.4375, Blast_Score=125, Evalue=6e-30,
Organism=Drosophila melanogaster, GI21356369, Length=128, Percent_Identity=48.4375, Blast_Score=125, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24645799, Length=128, Percent_Identity=48.4375, Blast_Score=125, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24645804, Length=139, Percent_Identity=44.6043165467626, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24645801, Length=139, Percent_Identity=44.6043165467626, Blast_Score=120, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MSRB_LACLA (Q9CJ17)

Other databases:

- EMBL:   AE005176
- PIR:   E86648
- RefSeq:   NP_266345.1
- ProteinModelPortal:   Q9CJ17
- SMR:   Q9CJ17
- GeneID:   1113798
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L192996
- NMPDR:   fig|272623.1.peg.197
- HOGENOM:   HBG715255
- OMA:   EPLFASA
- ProtClustDB:   PRK00222
- BioCyc:   LLAC272623:L192996-MONOMER
- BRENDA:   1.8.4.12
- HAMAP:   MF_01400
- InterPro:   IPR002579
- InterPro:   IPR011057
- Gene3D:   G3DSA:2.170.150.20
- TIGRFAMs:   TIGR00357

Pfam domain/function: PF01641 SelR; SSF51316 Mss4_like

EC number: =1.8.4.12

Molecular weight: Translated: 16144; Mature: 16144

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: ACT_SITE 115-115

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEKLKKKLSLLAYRVTQENGTEAPFANEFDDFFEQGLYVDVVSGEALFTSLDKYQSGC
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC
GWPAFTQPIDKGVVKEKRDKSLFMERTEVRSSNADSHLGHVFTDGPLDKGDLRYCINSAA
CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHH
LRFVPFDQLEAEGYGEYVKYFS
HEECCHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MEKEKLKKKLSLLAYRVTQENGTEAPFANEFDDFFEQGLYVDVVSGEALFTSLDKYQSGC
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC
GWPAFTQPIDKGVVKEKRDKSLFMERTEVRSSNADSHLGHVFTDGPLDKGDLRYCINSAA
CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHH
LRFVPFDQLEAEGYGEYVKYFS
HEECCHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471