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The map label for this gene is oppB [H]

Identifier: 15594677

GI number: 15594677

Start: 340341

End: 341261

Strand: Direct

Name: oppB [H]

Synonym: BB0332

Alternate gene names: 15594677

Gene position: 340341-341261 (Clockwise)

Preceding gene: 15594675

Following gene: 15594678

Centisome position: 37.37

GC content: 31.05

Gene sequence:

>921_bases
ATGTTAAAGTTTACTTTAAAGAAAATATTAGGAATAATACCAACTTTACTGGTAATAATTTTTTTATGCTTTTTTGTAAT
GAGAATGGCTCCTGGAAGTCCATTTGATTCTGAAAAACCTATTGATCCTCAAGTAAAAGCAAGATTGATGGAAAAATATC
ACCTTGACAAGCCTTTTTATATTCAAGCTTTTTATTACATTACAAACGCTCTCAGGGGAGATCTGGGACCTTCTTTGAAA
AAGAAAGACCTTACAGTTAGTCAATACATAAAATTAGGATTTCCAAAATCACTTACACTAGGAGTAATATCCCTTATTAT
ATCACTATCAATAGGAATACCAATAGGTATATTAGCTGCCATTTATAAAAATACTTATGTGGATTATATAATAACATCAA
TAGCAATATTGGGGATTTCAATACCATTATTCGTAATAGGGCCAATTTTACAATATTTTTTTGCAATTAAATGGGGTTTG
CTTTATACCTCTGGATGGATTACAGAAAGAGGAGGATTTTCAAATTTAATTCTACCCATAATAACTCTTAGCATGCCCAA
CGTAGCTATTTTCGCAAGAATAATCAGAGGATCAATGCTAGAAATAATACAAAGCGACTTTATAAGAACTGCGCGTGCAA
AAGGGCTAAGCTTCAAAAAGATAGTTATAAAGCATATGTTAAGAGGAGCAATGTTGCCTGTAGTAAGCTATATAGGTCCA
GCATTTGCTGCTATAATATCTGGAAGCGTGGTTATTGAAAAAATATTTAGAATTGCTGGAATGGGAATGTTTATAACAGA
ATCCGCACTAAACAGAGATTACCCAGTATTAATGGGCGGATTGTTAGTATATTCAATAATACTGCTTATTTCTATATTAA
TATCAGATATTATATATAAAATATTAGATCCAAGAGTATAA

Upstream 100 bases:

>100_bases
CTATCAAAAATTATCAACTATAGCTTGAAAAACAATAAAGACTATATGATATAATTGACTAATACGTAAGTTATCAATAT
CTATTTACAAAGGAGCAAAA

Downstream 100 bases:

>100_bases
GGGGAAATCAAAATGAATAGCCTTGAAAAACAAAATGAAGAAAACAATTCTAAACTAGAAAGAAGAGCTTGGTCAAGATT
TAAAGAAAATAAACTCGCAT

Product: peptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFYIQAFYYITNALRGDLGPSLK
KKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGL
LYTSGWITERGGFSNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIKHMLRGAMLPVVSYIGP
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYKILDPRV

Sequences:

>Translated_306_residues
MLKFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFYIQAFYYITNALRGDLGPSLK
KKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGL
LYTSGWITERGGFSNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIKHMLRGAMLPVVSYIGP
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYKILDPRV
>Mature_306_residues
MLKFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFYIQAFYYITNALRGDLGPSLK
KKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGL
LYTSGWITERGGFSNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIKHMLRGAMLPVVSYIGP
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYKILDPRV

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=42.156862745098, Blast_Score=263, Evalue=1e-71,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=34.7181008902077, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=35.3896103896104, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=30.5466237942122, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=29.0055248618785, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=30.4878048780488, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=25.4681647940075, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34062; Mature: 34062

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50928 ABC_TM1 ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHH
IQAFYYITNALRGDLGPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGILAA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH
IYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSGWITERGGFSNLILPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
ITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIKHMLRGAMLPVVSYIGP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDPRV
HHCCCC
>Mature Secondary Structure
MLKFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDSEKPIDPQVKARLMEKYHLDKPFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHH
IQAFYYITNALRGDLGPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGILAA
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH
IYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSGWITERGGFSNLILPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
ITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGLSFKKIVIKHMLRGAMLPVVSYIGP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPVLMGGLLVYSIILLISILISDIIYK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDPRV
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]