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The map label for this gene is pepF

Identifier: 15594593

GI number: 15594593

Start: 253159

End: 254931

Strand: Direct

Name: pepF

Synonym: BB0248

Alternate gene names: 15594593

Gene position: 253159-254931 (Clockwise)

Preceding gene: 15594592

Following gene: 15594594

Centisome position: 27.8

GC content: 27.75

Gene sequence:

>1773_bases
GTGATAAATAGAAATGAAATCAATGAGAATGATAAATGGGATTTATCTTTTCTATTTGCAAATGAAGAAGAATATGTAAA
AACAATCAATGCTATTGAAATTAAAACCAAAGAATTTAAAAAATATGAAAAACTGGAATTAAATTTTGATTTATTTAAAG
AAACTTTAAACAAATACTACGAAATCATGGAAGATTTAGAGAAAGTCTCTTACTATGCAATGCTTCAATTAGAAACAGAT
GTAACCAATAAAGATTCAAATAAAATATATTCCATATGTGTCAATTTAGCTACAAAAGTATCTAATACTACCTCATACTT
TATGCCTAAAATACTAAAAACAGACGAAAAAAAAATTCAAGCTTGGATAAATGATCCAGAGCTTAAGGATAAAAAAATTG
CAATTGAAAAAATACTAAGAGAAAAAAAACATATTTTAAGCGAACAAGAAGAAAAAATACTTGCTAACTACACCCCCCTT
TACACATCTTATCAAAGCATATTCTCAGCATTAACAAATGCTGATATGGAATTTGGAGAGATCAATAAACACCCTTTAAC
CAATTCTACCTACACACTATTTTTACAAAACGAAGATCAAAAAATACGAAAAGAAGCCTTTTTAAGATTTTATCAAAAAT
ACAAAAATAATGAAAATACGCTTGCTAATCTTATTATTTCAGACTTTAAGAAAAATCACTTCATTGCAAAGACAAGGAGG
TTCCAAAATACTTTTTCAATGCAGCTCTTTTCAAACAATATTGATAAAAAAGTTTATACAAATTTAATCGAAACTGTCAA
TGAAAATTTACCTGTGCTTAATGACTATTATGAGTTTAGAAAAAAAGTCTTAAACCAAGAATATCTATATCACTACGATG
TTTACGTACCATTAACAAAAGGAATAATATTTAAAAATTCATTTGAAGACGCTTGTGAGAAAATATTAAAATCTTTAGAG
GTACTAGGAAATGAATATACAAAAATCTTAAGAAACGGTCTTTTAAAAGAAAGATGGGTTGATAAATACGAGAATACTGG
AAAAAGATCAGGGGCTTTTAGCGCTGGATCATACAACGGAAAGCCTTATATACTTCTTAATTACAAAGACGAATCAATAA
GAGACATGTTTACGCTTGCACATGAAGCAGGACATTCAATGCACTCTTACTTTAGCATAAAAAACAACCCATTCCCACAC
TATAATTATTCCATTTTTGAAGCAGAAATAGCATCAATAATCAATGAACAAATATTGGCAGAATATTTGCTTAAAAACGA
AACCGATACTAACAAAATAAAATATATAAAACTAACACAAATTGACGACATGATTTCAACATTCTTTAGACAAACAATGT
TTGCTGAATTTGAGTACATTATTCATGAAATGATTAGCAAAGAAGAACCTGTAGTAAAAGAAACACTAACAGAAACTTAT
ATGAATTTGTTAAAAAAATACTTTGGACCTAGTCTAAAATTTGATGAATTAAGTCCCCTTGAATGCCTTAGAATTCCTCA
CTTTTATTCACCCTTTTATGTGTATCAATATGCTACAGGCATTGCAGCTGCTCTGTCAATATATAAAGGCATTAAAGAAA
ATAAAAAAGATGCAGTAGAAAATTATATAAAATTTTTAAAAACAGGTGGTTCTAAATATCCGCTAGATTCCTTAAATATT
ACCGGAGTAGATTTAACAAAAAAAGCAACAATAGAAAACACTATTAACATTTTCAAATGCAGACTTGAAGAGATAAAGAA
AATATTCCAATAA

Upstream 100 bases:

>100_bases
ATAAAGTTTAGACTTTATTGTAAAATAAAAAGCACAATGTTTATAAAATTTCAACTTATTATTTCTTTTCAAACAATAAA
AAAAGGAAGAGGAGAATTTA

Downstream 100 bases:

>100_bases
AAGGAGCTTTACTGTGAAAAATATCAATTTGATTTTAGCTTGGCTTGTACATATTTTTACAGCATCTGGCTTGATTGTAG
GACTTTACTCAATAATTTCA

Product: oligoendopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 590

Protein sequence:

>590_residues
MINRNEINENDKWDLSFLFANEEEYVKTINAIEIKTKEFKKYEKLELNFDLFKETLNKYYEIMEDLEKVSYYAMLQLETD
VTNKDSNKIYSICVNLATKVSNTTSYFMPKILKTDEKKIQAWINDPELKDKKIAIEKILREKKHILSEQEEKILANYTPL
YTSYQSIFSALTNADMEFGEINKHPLTNSTYTLFLQNEDQKIRKEAFLRFYQKYKNNENTLANLIISDFKKNHFIAKTRR
FQNTFSMQLFSNNIDKKVYTNLIETVNENLPVLNDYYEFRKKVLNQEYLYHYDVYVPLTKGIIFKNSFEDACEKILKSLE
VLGNEYTKILRNGLLKERWVDKYENTGKRSGAFSAGSYNGKPYILLNYKDESIRDMFTLAHEAGHSMHSYFSIKNNPFPH
YNYSIFEAEIASIINEQILAEYLLKNETDTNKIKYIKLTQIDDMISTFFRQTMFAEFEYIIHEMISKEEPVVKETLTETY
MNLLKKYFGPSLKFDELSPLECLRIPHFYSPFYVYQYATGIAAALSIYKGIKENKKDAVENYIKFLKTGGSKYPLDSLNI
TGVDLTKKATIENTINIFKCRLEEIKKIFQ

Sequences:

>Translated_590_residues
MINRNEINENDKWDLSFLFANEEEYVKTINAIEIKTKEFKKYEKLELNFDLFKETLNKYYEIMEDLEKVSYYAMLQLETD
VTNKDSNKIYSICVNLATKVSNTTSYFMPKILKTDEKKIQAWINDPELKDKKIAIEKILREKKHILSEQEEKILANYTPL
YTSYQSIFSALTNADMEFGEINKHPLTNSTYTLFLQNEDQKIRKEAFLRFYQKYKNNENTLANLIISDFKKNHFIAKTRR
FQNTFSMQLFSNNIDKKVYTNLIETVNENLPVLNDYYEFRKKVLNQEYLYHYDVYVPLTKGIIFKNSFEDACEKILKSLE
VLGNEYTKILRNGLLKERWVDKYENTGKRSGAFSAGSYNGKPYILLNYKDESIRDMFTLAHEAGHSMHSYFSIKNNPFPH
YNYSIFEAEIASIINEQILAEYLLKNETDTNKIKYIKLTQIDDMISTFFRQTMFAEFEYIIHEMISKEEPVVKETLTETY
MNLLKKYFGPSLKFDELSPLECLRIPHFYSPFYVYQYATGIAAALSIYKGIKENKKDAVENYIKFLKTGGSKYPLDSLNI
TGVDLTKKATIENTINIFKCRLEEIKKIFQ
>Mature_590_residues
MINRNEINENDKWDLSFLFANEEEYVKTINAIEIKTKEFKKYEKLELNFDLFKETLNKYYEIMEDLEKVSYYAMLQLETD
VTNKDSNKIYSICVNLATKVSNTTSYFMPKILKTDEKKIQAWINDPELKDKKIAIEKILREKKHILSEQEEKILANYTPL
YTSYQSIFSALTNADMEFGEINKHPLTNSTYTLFLQNEDQKIRKEAFLRFYQKYKNNENTLANLIISDFKKNHFIAKTRR
FQNTFSMQLFSNNIDKKVYTNLIETVNENLPVLNDYYEFRKKVLNQEYLYHYDVYVPLTKGIIFKNSFEDACEKILKSLE
VLGNEYTKILRNGLLKERWVDKYENTGKRSGAFSAGSYNGKPYILLNYKDESIRDMFTLAHEAGHSMHSYFSIKNNPFPH
YNYSIFEAEIASIINEQILAEYLLKNETDTNKIKYIKLTQIDDMISTFFRQTMFAEFEYIIHEMISKEEPVVKETLTETY
MNLLKKYFGPSLKFDELSPLECLRIPHFYSPFYVYQYATGIAAALSIYKGIKENKKDAVENYIKFLKTGGSKYPLDSLNI
TGVDLTKKATIENTINIFKCRLEEIKKIFQ

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PEPF_BORBU (O51264)

Other databases:

- EMBL:   AE000783
- PIR:   H70130
- RefSeq:   NP_212382.1
- ProteinModelPortal:   O51264
- SMR:   O51264
- MEROPS:   M03.007
- EnsemblBacteria:   EBBORT00000008475
- GeneID:   1195085
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0248
- NMPDR:   fig|224326.1.peg.632
- TIGR:   BB_0248
- GeneTree:   EBGT00050000006862
- HOGENOM:   HBG305137
- OMA:   IFEAEIA
- ProtClustDB:   CLSK507465
- BioCyc:   BBUR224326:BB_0248-MONOMER
- GO:   GO:0006508
- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647
- TIGRFAMs:   TIGR00181

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N

EC number: NA

Molecular weight: Translated: 69724; Mature: 69724

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: ACT_SITE 382-382

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRNEINENDKWDLSFLFANEEEYVKTINAIEIKTKEFKKYEKLELNFDLFKETLNKYY
CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHH
EIMEDLEKVSYYAMLQLETDVTNKDSNKIYSICVNLATKVSNTTSYFMPKILKTDEKKIQ
HHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
AWINDPELKDKKIAIEKILREKKHILSEQEEKILANYTPLYTSYQSIFSALTNADMEFGE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
INKHPLTNSTYTLFLQNEDQKIRKEAFLRFYQKYKNNENTLANLIISDFKKNHFIAKTRR
CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
FQNTFSMQLFSNNIDKKVYTNLIETVNENLPVLNDYYEFRKKVLNQEYLYHYDVYVPLTK
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHEEEEEEEEEHHC
GIIFKNSFEDACEKILKSLEVLGNEYTKILRNGLLKERWVDKYENTGKRSGAFSAGSYNG
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KPYILLNYKDESIRDMFTLAHEAGHSMHSYFSIKNNPFPHYNYSIFEAEIASIINEQILA
CEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
EYLLKNETDTNKIKYIKLTQIDDMISTFFRQTMFAEFEYIIHEMISKEEPVVKETLTETY
HHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
MNLLKKYFGPSLKFDELSPLECLRIPHFYSPFYVYQYATGIAAALSIYKGIKENKKDAVE
HHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
NYIKFLKTGGSKYPLDSLNITGVDLTKKATIENTINIFKCRLEEIKKIFQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MINRNEINENDKWDLSFLFANEEEYVKTINAIEIKTKEFKKYEKLELNFDLFKETLNKYY
CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHH
EIMEDLEKVSYYAMLQLETDVTNKDSNKIYSICVNLATKVSNTTSYFMPKILKTDEKKIQ
HHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
AWINDPELKDKKIAIEKILREKKHILSEQEEKILANYTPLYTSYQSIFSALTNADMEFGE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
INKHPLTNSTYTLFLQNEDQKIRKEAFLRFYQKYKNNENTLANLIISDFKKNHFIAKTRR
CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH
FQNTFSMQLFSNNIDKKVYTNLIETVNENLPVLNDYYEFRKKVLNQEYLYHYDVYVPLTK
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHEEEEEEEEEHHC
GIIFKNSFEDACEKILKSLEVLGNEYTKILRNGLLKERWVDKYENTGKRSGAFSAGSYNG
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KPYILLNYKDESIRDMFTLAHEAGHSMHSYFSIKNNPFPHYNYSIFEAEIASIINEQILA
CEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
EYLLKNETDTNKIKYIKLTQIDDMISTFFRQTMFAEFEYIIHEMISKEEPVVKETLTETY
HHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
MNLLKKYFGPSLKFDELSPLECLRIPHFYSPFYVYQYATGIAAALSIYKGIKENKKDAVE
HHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
NYIKFLKTGGSKYPLDSLNITGVDLTKKATIENTINIFKCRLEEIKKIFQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9403685