Click here to switch to the map view.

The map label for this gene is 154248189

Identifier: 154248189

GI number: 154248189

Start: 4735860

End: 4736462

Strand: Direct

Name: 154248189

Synonym: Xaut_4269

Alternate gene names: NA

Gene position: 4735860-4736462 (Clockwise)

Preceding gene: 154248188

Following gene: 154248190

Centisome position: 89.21

GC content: 66.83

Gene sequence:

>603_bases
TTGGATCACCGCACGCCCCGAACGTCCGAACTGCTTGCCGCCGTCCTTGCCGCCCAGGAAGAGGACAAGGTGGCCATTGG
CGACCTCGTGAACGCCTTGCGCAATCGCGCCTTCGGCATTCTCTTTCTCATCTTCGGCATTCCCAACTGCATCCCCATGC
CGCCCGGCATTCCGGTGATCTGCGGCACCATCCTCGGCCTCATCGGCCTGCAGATGGCCATGGGCCGGCAGGAATTGTGG
CTGCCGGAGCGCATCGCCCGGCGCACCTTTTCGCGGGCCATGCTGGAGAGCATCGTCACCCGCTCCCGGCCCTGGATCGA
GCGTTTCGAGAAGCTCTCCCGGCCGCGCTATGAGCAGTTTGCCGGCCCCACCGCCCGCCGTGTGGTGGGGGCGACGGTGG
TGCTGCTGGGCTTCATCCTGCTTCTGCCCATTCCCTTCCTCGGCAATCTGCCGCCCGGCTTTGCCGTGTGCATCTTCGGC
CTCGGGCTGGTGGAGCGGGACGGCCTCGTGATCCTCGCCGGTTTCGGCGCCACGGTGCTGGGGCTGCTGATCACCGCCGC
CATGAGCTGGGCCATCTACCAGGGCGCGGTCGCCATCTTCTGA

Upstream 100 bases:

>100_bases
ATCGTTGTGTGGACGCGGGCGGGGCGTGCGGCTTCGACGCCCTGACACCGCCGTTTTCACGATGCTAAGAGTTAAGGTGA
CCCATGGAAACGAGGTCCCG

Downstream 100 bases:

>100_bases
TCCCGCCGCGATTCCCGCCAAACGAGCCAGCAGCCCGATCCCATGCGCGTTGACGCCTTCGACTTCGATCTCCCGGAGGA
GCATATCGCCCTGCGCCCGG

Product: exopolysaccharide synthesis ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MDHRTPRTSELLAAVLAAQEEDKVAIGDLVNALRNRAFGILFLIFGIPNCIPMPPGIPVICGTILGLIGLQMAMGRQELW
LPERIARRTFSRAMLESIVTRSRPWIERFEKLSRPRYEQFAGPTARRVVGATVVLLGFILLLPIPFLGNLPPGFAVCIFG
LGLVERDGLVILAGFGATVLGLLITAAMSWAIYQGAVAIF

Sequences:

>Translated_200_residues
MDHRTPRTSELLAAVLAAQEEDKVAIGDLVNALRNRAFGILFLIFGIPNCIPMPPGIPVICGTILGLIGLQMAMGRQELW
LPERIARRTFSRAMLESIVTRSRPWIERFEKLSRPRYEQFAGPTARRVVGATVVLLGFILLLPIPFLGNLPPGFAVCIFG
LGLVERDGLVILAGFGATVLGLLITAAMSWAIYQGAVAIF
>Mature_200_residues
MDHRTPRTSELLAAVLAAQEEDKVAIGDLVNALRNRAFGILFLIFGIPNCIPMPPGIPVICGTILGLIGLQMAMGRQELW
LPERIARRTFSRAMLESIVTRSRPWIERFEKLSRPRYEQFAGPTARRVVGATVVLLGFILLLPIPFLGNLPPGFAVCIFG
LGLVERDGLVILAGFGATVLGLLITAAMSWAIYQGAVAIF

Specific function: Unknown

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti exoD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 21795; Mature: 21795

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHRTPRTSELLAAVLAAQEEDKVAIGDLVNALRNRAFGILFLIFGIPNCIPMPPGIPVI
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
CGTILGLIGLQMAMGRQELWLPERIARRTFSRAMLESIVTRSRPWIERFEKLSRPRYEQF
HHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
AGPTARRVVGATVVLLGFILLLPIPFLGNLPPGFAVCIFGLGLVERDGLVILAGFGATVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHH
GLLITAAMSWAIYQGAVAIF
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDHRTPRTSELLAAVLAAQEEDKVAIGDLVNALRNRAFGILFLIFGIPNCIPMPPGIPVI
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
CGTILGLIGLQMAMGRQELWLPERIARRTFSRAMLESIVTRSRPWIERFEKLSRPRYEQF
HHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
AGPTARRVVGATVVLLGFILLLPIPFLGNLPPGFAVCIFGLGLVERDGLVILAGFGATVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHH
GLLITAAMSWAIYQGAVAIF
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]