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The map label for this gene is ntrC [H]

Identifier: 154246755

GI number: 154246755

Start: 3137282

End: 3137644

Strand: Reverse

Name: ntrC [H]

Synonym: Xaut_2816

Alternate gene names: 154246755

Gene position: 3137644-3137282 (Counterclockwise)

Preceding gene: 154246758

Following gene: 154246753

Centisome position: 59.1

GC content: 62.81

Gene sequence:

>363_bases
GTGCCCAAGATCCTGCTCGCCGAAGATGACAACGACATGCGGCGCTTTCTTGTGAAGGCGCTTCAGAACGCGGGCTATTC
CGTCGCCTCGTGCGACAATGGAAGGTCCGCATATGAGCGCATGCGCGAGGAACCCTTCGAGCTTCTGCTCACCGACATCG
TCATGCCCGAGATGGACGGCATCGAACTCGCCCGCCGGGCGACCGAGCTCGATCCCGACCTCAAGGTCATGTTCATCACC
GGCTTCGCCGCCGTGGCGCTGAATGCCGACAACGAGGCGCCCAGCGAGGCGAAGGTGCTGTCCAAGCCCTTCCACCTGCG
CGATCTCGTCTCCGAGGTGGGAAAGATGTTGGCAGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCGACCTTCACTTCGAATTTACCCGATTGGGTCAGACAAGACATATGGCCCCCGGCCCCGCACCGGGGAAGGACCGATC
ACGACATCAGGGGAAGTGGC

Downstream 100 bases:

>100_bases
TCCGCACTCAGGGGCCTTGCCTCCGGCGAAACCGGCCGATATAGAGGCGGCTCCTGCGAGGGGGCGCGTAGCTCAGCGGG
AGAGCACTACGTTGACATCG

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MPKILLAEDDNDMRRFLVKALQNAGYSVASCDNGRSAYERMREEPFELLLTDIVMPEMDGIELARRATELDPDLKVMFIT
GFAAVALNADNEAPSEAKVLSKPFHLRDLVSEVGKMLAAA

Sequences:

>Translated_120_residues
MPKILLAEDDNDMRRFLVKALQNAGYSVASCDNGRSAYERMREEPFELLLTDIVMPEMDGIELARRATELDPDLKVMFIT
GFAAVALNADNEAPSEAKVLSKPFHLRDLVSEVGKMLAAA
>Mature_119_residues
PKILLAEDDNDMRRFLVKALQNAGYSVASCDNGRSAYERMREEPFELLLTDIVMPEMDGIELARRATELDPDLKVMFITG
FAAVALNADNEAPSEAKVLSKPFHLRDLVSEVGKMLAAA

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=115, Percent_Identity=33.0434782608696, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 13301; Mature: 13170

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKILLAEDDNDMRRFLVKALQNAGYSVASCDNGRSAYERMREEPFELLLTDIVMPEMDG
CCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
IELARRATELDPDLKVMFITGFAAVALNADNEAPSEAKVLSKPFHLRDLVSEVGKMLAAA
HHHHHHHHCCCCCCEEEEEECHHHEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKILLAEDDNDMRRFLVKALQNAGYSVASCDNGRSAYERMREEPFELLLTDIVMPEMDG
CCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
IELARRATELDPDLKVMFITGFAAVALNADNEAPSEAKVLSKPFHLRDLVSEVGKMLAAA
HHHHHHHHCCCCCCEEEEEECHHHEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]