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The map label for this gene is pecT [H]

Identifier: 154246696

GI number: 154246696

Start: 3052502

End: 3053380

Strand: Reverse

Name: pecT [H]

Synonym: Xaut_2757

Alternate gene names: 154246696

Gene position: 3053380-3052502 (Counterclockwise)

Preceding gene: 154246698

Following gene: 154246691

Centisome position: 57.51

GC content: 69.4

Gene sequence:

>879_bases
ATGCGCTTTCCCGATCTTGAACTCGACCTGCTGCGCGCCTTCGTGGCGGTGGCGGAGACCGGCGGCTTCACCGCCGCCGC
CGAGGTGGTCGGCCGCTCGCAATCGGCGGTGAGTCAGAAGGTCCTCAAGCTCGAGGAGCTTCTGGGGCGCCGCGTGTTCG
AGCGCACCAGCCGCTCCCTCACCCTCACCCGCGAGGGCGAGACGCTGCTGGGGATGGCGCGGCGTATCCTGGAACTGAAC
GAGCTTGCGGTGCGCTCCCTGCTGGAGCCCACTGTCGGCAGCCTGCGCCTCGGCGTGTCCGAGGATTTCATGCCGAACCT
GCTGCCGGGCATGCTGGCGCGCTTCCAGCGGCTTTATCCGGGCCTGCATATGGAATTGCGCACCGGGCTCAGCTGCGAGT
TGCTGGCCGCCTACGATTCCGGACAGCTCGACGCGGTCATCGCCAAGAAGGACGGCACCGCCCAGCGCGGCCGCGTGATC
TGGCGCGAACAACTGGTGTGGATGGCCTCCGCCGACTACCAGCCGGACTTCGAGCGGCCGGCACCGCTGGTGCTGCTGCC
GGCGCCCTGCACCTATCGGGAGGTGATGATAAAAGCGCTGGACGCGGTGCGCCGGCCCTGGTTCGCGGCCTGCACGGCGT
CAAGCCTCACCGGCATCCGCGCGGCGGTGGCCGGCGGGCTTGGCGTGACCGTATTGGGGCGCTCCTTCATCGGCCCCGAC
ATGCAGGCCCTGCGCGCGCCGGACCACTGGCCCGCCTTGCCCATGACCGAAGTGGTTCTGGTGGGCGAGGAACGGGCGGA
AGCGGACCTGGTGCGCCCGCTGGTCACCTTCCTCACCGAAACGCTGGCGACCCAGGCCTTTCCCTCAGCCGTCGCTTGA

Upstream 100 bases:

>100_bases
GCAGCCTCGTGGGGAAACAGGAGTGCAAGATCGCTTATTGGCCTCAAGAAGAAAAACGCATAATTCTGATCACAGAAAAT
CGAGATGCGAATAGATCCCC

Downstream 100 bases:

>100_bases
ACGTCGCAACTTACGCCAGCCGCACCGGCTCCTGCGGCAAGGGCGGGGGATCATCCAGCGGTGGCGGCTCGGGGAACGGC
TCGCGGCGCGGCTCCCGGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRFPDLELDLLRAFVAVAETGGFTAAAEVVGRSQSAVSQKVLKLEELLGRRVFERTSRSLTLTREGETLLGMARRILELN
ELAVRSLLEPTVGSLRLGVSEDFMPNLLPGMLARFQRLYPGLHMELRTGLSCELLAAYDSGQLDAVIAKKDGTAQRGRVI
WREQLVWMASADYQPDFERPAPLVLLPAPCTYREVMIKALDAVRRPWFAACTASSLTGIRAAVAGGLGVTVLGRSFIGPD
MQALRAPDHWPALPMTEVVLVGEERAEADLVRPLVTFLTETLATQAFPSAVA

Sequences:

>Translated_292_residues
MRFPDLELDLLRAFVAVAETGGFTAAAEVVGRSQSAVSQKVLKLEELLGRRVFERTSRSLTLTREGETLLGMARRILELN
ELAVRSLLEPTVGSLRLGVSEDFMPNLLPGMLARFQRLYPGLHMELRTGLSCELLAAYDSGQLDAVIAKKDGTAQRGRVI
WREQLVWMASADYQPDFERPAPLVLLPAPCTYREVMIKALDAVRRPWFAACTASSLTGIRAAVAGGLGVTVLGRSFIGPD
MQALRAPDHWPALPMTEVVLVGEERAEADLVRPLVTFLTETLATQAFPSAVA
>Mature_292_residues
MRFPDLELDLLRAFVAVAETGGFTAAAEVVGRSQSAVSQKVLKLEELLGRRVFERTSRSLTLTREGETLLGMARRILELN
ELAVRSLLEPTVGSLRLGVSEDFMPNLLPGMLARFQRLYPGLHMELRTGLSCELLAAYDSGQLDAVIAKKDGTAQRGRVI
WREQLVWMASADYQPDFERPAPLVLLPAPCTYREVMIKALDAVRRPWFAACTASSLTGIRAAVAGGLGVTVLGRSFIGPD
MQALRAPDHWPALPMTEVVLVGEERAEADLVRPLVTFLTETLATQAFPSAVA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=269, Percent_Identity=36.0594795539033, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787806, Length=263, Percent_Identity=29.6577946768061, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790399, Length=239, Percent_Identity=29.7071129707113, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790262, Length=142, Percent_Identity=30.2816901408451, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787879, Length=261, Percent_Identity=29.8850574712644, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789639, Length=143, Percent_Identity=35.6643356643357, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=27.4590163934426, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=35.8333333333333, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=28.7671232876712, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786448, Length=142, Percent_Identity=38.7323943661972, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=123, Percent_Identity=30.8943089430894, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=177, Percent_Identity=31.0734463276836, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=25.6, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=143, Percent_Identity=30.0699300699301, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081904, Length=147, Percent_Identity=31.2925170068027, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1789173, Length=121, Percent_Identity=33.0578512396694, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31931; Mature: 31931

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPDLELDLLRAFVAVAETGGFTAAAEVVGRSQSAVSQKVLKLEELLGRRVFERTSRSL
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
TLTREGETLLGMARRILELNELAVRSLLEPTVGSLRLGVSEDFMPNLLPGMLARFQRLYP
EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCC
GLHMELRTGLSCELLAAYDSGQLDAVIAKKDGTAQRGRVIWREQLVWMASADYQPDFERP
CCCCHHHCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
APLVLLPAPCTYREVMIKALDAVRRPWFAACTASSLTGIRAAVAGGLGVTVLGRSFIGPD
CCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
MQALRAPDHWPALPMTEVVLVGEERAEADLVRPLVTFLTETLATQAFPSAVA
HHHHCCCCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRFPDLELDLLRAFVAVAETGGFTAAAEVVGRSQSAVSQKVLKLEELLGRRVFERTSRSL
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
TLTREGETLLGMARRILELNELAVRSLLEPTVGSLRLGVSEDFMPNLLPGMLARFQRLYP
EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHHCC
GLHMELRTGLSCELLAAYDSGQLDAVIAKKDGTAQRGRVIWREQLVWMASADYQPDFERP
CCCCHHHCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
APLVLLPAPCTYREVMIKALDAVRRPWFAACTASSLTGIRAAVAGGLGVTVLGRSFIGPD
CCEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
MQALRAPDHWPALPMTEVVLVGEERAEADLVRPLVTFLTETLATQAFPSAVA
HHHHCCCCCCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]