Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 154246602

GI number: 154246602

Start: 2954796

End: 2955302

Strand: Reverse

Name: rpoE [H]

Synonym: Xaut_2662

Alternate gene names: 154246602

Gene position: 2955302-2954796 (Counterclockwise)

Preceding gene: 154246603

Following gene: 154246601

Centisome position: 55.67

GC content: 60.95

Gene sequence:

>507_bases
TTGGACGAGATCGCCAAGCTGATCGAACCGCAGATTCCTGCCTTGCGCAGGTACGCCTACGCGCTCGTCCGTGACCATGA
CGCCGCCGACGACCTGGTGCAGGACTGTCTTGAGCGGGCCGTGTCGCGCTGGTATCTGCGCCGCGACGACGGTCACCTGC
GGGCCTGGCTGTTCACGATGCTTCGAAATCTCTACATCAATTCCTATCATCGACAGAAGCGTCGGGGCACTCGCGTTCGT
CTCGACGAGTCGATAATGCCGAGCGTGGCACCAAACCAGACCGATCAGCTGGAGATGAACGACGTTCTATCGGCGCTCGA
AAGGCTGCCCGAGGATCATAAGTCGATCCTTCTGCTGATCGGGGTCGAGGACCTGTCCTATGAGGAGACGGCGAGAGTGC
TTTCGGTGCCGGTCGGCACCGTCATGTCTCGCCTGTCTCGTGCGCGACAAGGACTGCGCGCATTGCTGAGCGGTTCGCGC
GTAACCCCGCTTCGGAGGGTCAAATGA

Upstream 100 bases:

>100_bases
GGTCAATCCGAACGCGAGCTACTGACCCCGATTCACGATGATCTGTTCGGCGAGGTATGCCGTGCCGGCGTCCTCGCCGA
ATGGATGAGGAGCTCAAGGG

Downstream 100 bases:

>100_bases
CGAATACGCCCCTTCCGATCGGCGAAGACGATCTGCAGGCCTATGTCGACGACCGCCAGAGCGAGGTCCGGCGATCAGAA
GTCGATGCCTACCTTGCGGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MDEIAKLIEPQIPALRRYAYALVRDHDAADDLVQDCLERAVSRWYLRRDDGHLRAWLFTMLRNLYINSYHRQKRRGTRVR
LDESIMPSVAPNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGLRALLSGSR
VTPLRRVK

Sequences:

>Translated_168_residues
MDEIAKLIEPQIPALRRYAYALVRDHDAADDLVQDCLERAVSRWYLRRDDGHLRAWLFTMLRNLYINSYHRQKRRGTRVR
LDESIMPSVAPNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGLRALLSGSR
VTPLRRVK
>Mature_168_residues
MDEIAKLIEPQIPALRRYAYALVRDHDAADDLVQDCLERAVSRWYLRRDDGHLRAWLFTMLRNLYINSYHRQKRRGTRVR
LDESIMPSVAPNQTDQLEMNDVLSALERLPEDHKSILLLIGVEDLSYEETARVLSVPVGTVMSRLSRARQGLRALLSGSR
VTPLRRVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19450; Mature: 19450

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIAKLIEPQIPALRRYAYALVRDHDAADDLVQDCLERAVSRWYLRRDDGHLRAWLFTM
CHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LRNLYINSYHRQKRRGTRVRLDESIMPSVAPNQTDQLEMNDVLSALERLPEDHKSILLLI
HHHHHHHHHHHHHHCCCCEEECHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEE
GVEDLSYEETARVLSVPVGTVMSRLSRARQGLRALLSGSRVTPLRRVK
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure
MDEIAKLIEPQIPALRRYAYALVRDHDAADDLVQDCLERAVSRWYLRRDDGHLRAWLFTM
CHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LRNLYINSYHRQKRRGTRVRLDESIMPSVAPNQTDQLEMNDVLSALERLPEDHKSILLLI
HHHHHHHHHHHHHHCCCCEEECHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEEEEE
GVEDLSYEETARVLSVPVGTVMSRLSRARQGLRALLSGSRVTPLRRVK
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]