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The map label for this gene is cph2 [H]

Identifier: 154246429

GI number: 154246429

Start: 2780925

End: 2782214

Strand: Direct

Name: cph2 [H]

Synonym: Xaut_2488

Alternate gene names: 154246429

Gene position: 2780925-2782214 (Clockwise)

Preceding gene: 154246424

Following gene: 154246432

Centisome position: 52.38

GC content: 66.05

Gene sequence:

>1290_bases
GTGCCAAATCTAAGATCTTACAGTTTCATGGGCGGCCTTCTCGATTCCATCGACATCGCCTTGTGCCTGTTCGATGCGGA
CGATCGGACACTGGTATGGAACGACTGCTTCCTGCGCTTTTTCCCCGAGCACGCAGGCCGTGTGCACCGGGGCGAGGCCT
ACCGGGAGAATCTGCGCCGGTTCTATGACAGCCGGCTCGATGGCGAGGAGCGCCGACACCTCGATCGTTACGTTGAGGAG
GGCATTGCCCGCCACCGGGCGCAGTCGCGCCCCTTCGTTTTCACTCATCTCGACCGCCGCCTGCGCGTCGCCTCCCTGCC
GACGCCGGAGGGGCTGCGCATCCGCATCTGGCAGCACCTGCACGAGGAGCCGCAGCAGATGCGTGCCGGCGGCTGGGATG
TCTTTCCCATCGACCTGCTCGACCATATCGCCGATGGCGCCATGGTGCTCGACCAGAACGACCGCATCATCGCCACCAAC
AACGAGTTCCGCATTCTTTACGACGTTCCCGAAGGTCATTCGGTGATCGGCGCCACGCTCCAGGACGTGGTGCGGGACGC
CTGGGCCAAGGTCGATCAGCCGGAGCGCTGGACCGACGGCTTCGTGCAGGACAGCCTGCATTTTGCCGGCGCGCCGTTCG
AGGTGGAACTGCCGGCGGGGCGCTGGCGCCGTGTCATTGCCCGGCGCACGGCGTCCGGCATCGGCTACTTCACCCACTCC
GACATTACCGAGCTGAAGCGCCAGCAGGCCGCGCTGGAGCGGGCCCTGGCCGAACTCTCGGCCATCGCAGCCACTGATGT
GCTCACCGGCCTTGCCAACCGGCGGGGGTTTGAAAAGGCGATCTCCGCCGCCTGGCACGCATGTGGCGTGGCCGGCACGC
CGGTGGCGGTGATCATCATTGATCTCGACCACTTCAAGGCCATCAACGACCGGTTCGGCCATGCCGCCGGCGACGAGTGC
CTGCGGCGCATTGCCGACGCGGTGCGCAGTTCCGTGACCCGGGCCGATGATCTCGCCGCCCGCCATGGCGGCGAGGAATT
CGCCATCCTTCTGCCCAACGCCACGGCCGAGGAAGCGCTCGCCATCGGTCAGGGCATCCGCCGTTCGGTGCGCGTGGAGC
CATGGGCCCAGGTGCATCCCGATCTCAACCGGCTCACCGTGAGCATGGGGATCTGCGCGGTGAAGTCGGCGTGCGAGGTG
GATATCGACTTGGCCATGCGGCATGCGGATGAGGCCCTGTATCGGGCCAAGAAGCGCGGTCGCGACCGGATTGAAATCCA
GCGAGCCTGA

Upstream 100 bases:

>100_bases
GGTCACCATAGTACCTTGGCGGACGCGCCCTTCCCGAAGGTTCGGTTCGGGCGCGGGATTTGGGGCGCAGGATCATGAGG
CAACCAACAGGGCGGGTCGG

Downstream 100 bases:

>100_bases
CGGCCTCGGTCGGGCTCAGGCGGGGTCGAGACCCTGTCCCTTCCGGGCGGGTGCATTGGAATGCCGTCTCCGCGCGTCCG
CCGCGAGTGTGACGAGCAGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MPNLRSYSFMGGLLDSIDIALCLFDADDRTLVWNDCFLRFFPEHAGRVHRGEAYRENLRRFYDSRLDGEERRHLDRYVEE
GIARHRAQSRPFVFTHLDRRLRVASLPTPEGLRIRIWQHLHEEPQQMRAGGWDVFPIDLLDHIADGAMVLDQNDRIIATN
NEFRILYDVPEGHSVIGATLQDVVRDAWAKVDQPERWTDGFVQDSLHFAGAPFEVELPAGRWRRVIARRTASGIGYFTHS
DITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAAWHACGVAGTPVAVIIIDLDHFKAINDRFGHAAGDEC
LRRIADAVRSSVTRADDLAARHGGEEFAILLPNATAEEALAIGQGIRRSVRVEPWAQVHPDLNRLTVSMGICAVKSACEV
DIDLAMRHADEALYRAKKRGRDRIEIQRA

Sequences:

>Translated_429_residues
MPNLRSYSFMGGLLDSIDIALCLFDADDRTLVWNDCFLRFFPEHAGRVHRGEAYRENLRRFYDSRLDGEERRHLDRYVEE
GIARHRAQSRPFVFTHLDRRLRVASLPTPEGLRIRIWQHLHEEPQQMRAGGWDVFPIDLLDHIADGAMVLDQNDRIIATN
NEFRILYDVPEGHSVIGATLQDVVRDAWAKVDQPERWTDGFVQDSLHFAGAPFEVELPAGRWRRVIARRTASGIGYFTHS
DITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAAWHACGVAGTPVAVIIIDLDHFKAINDRFGHAAGDEC
LRRIADAVRSSVTRADDLAARHGGEEFAILLPNATAEEALAIGQGIRRSVRVEPWAQVHPDLNRLTVSMGICAVKSACEV
DIDLAMRHADEALYRAKKRGRDRIEIQRA
>Mature_428_residues
PNLRSYSFMGGLLDSIDIALCLFDADDRTLVWNDCFLRFFPEHAGRVHRGEAYRENLRRFYDSRLDGEERRHLDRYVEEG
IARHRAQSRPFVFTHLDRRLRVASLPTPEGLRIRIWQHLHEEPQQMRAGGWDVFPIDLLDHIADGAMVLDQNDRIIATNN
EFRILYDVPEGHSVIGATLQDVVRDAWAKVDQPERWTDGFVQDSLHFAGAPFEVELPAGRWRRVIARRTASGIGYFTHSD
ITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAAWHACGVAGTPVAVIIIDLDHFKAINDRFGHAAGDECL
RRIADAVRSSVTRADDLAARHGGEEFAILLPNATAEEALAIGQGIRRSVRVEPWAQVHPDLNRLTVSMGICAVKSACEVD
IDLAMRHADEALYRAKKRGRDRIEIQRA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=41.25, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=39.6341463414634, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=38.9189189189189, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=32.9842931937173, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=37.7777777777778, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787541, Length=235, Percent_Identity=33.1914893617021, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=31.6939890710383, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=228, Percent_Identity=29.3859649122807, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=32.3699421965318, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081977, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=32.5301204819277, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787056, Length=180, Percent_Identity=31.6666666666667, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=31.6770186335404, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 48400; Mature: 48269

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLRSYSFMGGLLDSIDIALCLFDADDRTLVWNDCFLRFFPEHAGRVHRGEAYRENLRR
CCCCCCHHHHHHHHHHHEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH
FYDSRLDGEERRHLDRYVEEGIARHRAQSRPFVFTHLDRRLRVASLPTPEGLRIRIWQHL
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHEEECCCCCCCCEEHHHHHH
HEEPQQMRAGGWDVFPIDLLDHIADGAMVLDQNDRIIATNNEFRILYDVPEGHSVIGATL
HHCHHHHHCCCCCEEHHHHHHHHCCCEEEEECCCEEEEECCCEEEEEECCCCCHHHHHHH
QDVVRDAWAKVDQPERWTDGFVQDSLHFAGAPFEVELPAGRWRRVIARRTASGIGYFTHS
HHHHHHHHHCCCCCCHHHCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCH
DITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAAWHACGVAGTPVAVIII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE
DLDHFKAINDRFGHAAGDECLRRIADAVRSSVTRADDLAARHGGEEFAILLPNATAEEAL
ECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
AIGQGIRRSVRVEPWAQVHPDLNRLTVSMGICAVKSACEVDIDLAMRHADEALYRAKKRG
HHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
RDRIEIQRA
CCCEEEECC
>Mature Secondary Structure 
PNLRSYSFMGGLLDSIDIALCLFDADDRTLVWNDCFLRFFPEHAGRVHRGEAYRENLRR
CCCCCHHHHHHHHHHHEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH
FYDSRLDGEERRHLDRYVEEGIARHRAQSRPFVFTHLDRRLRVASLPTPEGLRIRIWQHL
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHEEECCCCCCCCEEHHHHHH
HEEPQQMRAGGWDVFPIDLLDHIADGAMVLDQNDRIIATNNEFRILYDVPEGHSVIGATL
HHCHHHHHCCCCCEEHHHHHHHHCCCEEEEECCCEEEEECCCEEEEEECCCCCHHHHHHH
QDVVRDAWAKVDQPERWTDGFVQDSLHFAGAPFEVELPAGRWRRVIARRTASGIGYFTHS
HHHHHHHHHCCCCCCHHHCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCH
DITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAAWHACGVAGTPVAVIII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE
DLDHFKAINDRFGHAAGDECLRRIADAVRSSVTRADDLAARHGGEEFAILLPNATAEEAL
ECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
AIGQGIRRSVRVEPWAQVHPDLNRLTVSMGICAVKSACEVDIDLAMRHADEALYRAKKRG
HHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
RDRIEIQRA
CCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]