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The map label for this gene is ybaK [H]

Identifier: 154246362

GI number: 154246362

Start: 2704713

End: 2705186

Strand: Reverse

Name: ybaK [H]

Synonym: Xaut_2421

Alternate gene names: 154246362

Gene position: 2705186-2704713 (Counterclockwise)

Preceding gene: 154246363

Following gene: 154246361

Centisome position: 50.96

GC content: 66.67

Gene sequence:

>474_bases
ATGTCGAAGGCGACGCGGGCCACCAAGATGCTGGAACAGGCGAAGATCGCCTTCACCGTGCACAGCTACGATTATGACCC
CGACGCGGACCGCATCGGCATCCAGGCCGCCGAGGCTCTGGGGGAAGCGCCGGAGCGCGTGCTCAAGACGCTGATGGCGC
TGGTGGATGGCAAGGCGGTCTGCGTGATCGTGCCGTCGGACCACGAAGTGTCCATGAAGAAGCTCGCCGCTGCGTTCGGC
GGCAAGTCCGCCCAGATGATGAAGCCGGCCGACGCCGAGCGCATGAGCGGCTACAAGGTGGGCGGCATCAGCCCGTTCGG
GCAGATGAAGAAGGTGCCGGCCGCCATGGAAGAGCAGGCGGTGCACCACGATGCCGTCTTCATCAACGGCGGCCAGCGGG
GCCTTCAGGTGCGCCTCAACCCGCGCGAGGCGGCAAGCCTGCTCAATGCCGCCGTGGTGTCGCTGGTGGCGTAA

Upstream 100 bases:

>100_bases
GGTACCGGCGTGCGGCCCGCGTGACGGCTCCGGCATCTTCCCAACACCGTCCGCGCGGACCAACATGGGTCCCCGCCGGA
TCGGGACAGGATGTATCGGG

Downstream 100 bases:

>100_bases
GCCCCGGCGGATCGCTCTCGCCTGATCCGGCCGCGCCCGGTCTTGCGACCCATGTCCTGACGCGGCTCAGATACGTGGTG
GCGCGTGCGGTATAATTCTG

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKATRATKMLEQAKIAFTVHSYDYDPDADRIGIQAAEALGEAPERVLKTLMALVDGKAVCVIVPSDHEVSMKKLAAAFG
GKSAQMMKPADAERMSGYKVGGISPFGQMKKVPAAMEEQAVHHDAVFINGGQRGLQVRLNPREAASLLNAAVVSLVA

Sequences:

>Translated_157_residues
MSKATRATKMLEQAKIAFTVHSYDYDPDADRIGIQAAEALGEAPERVLKTLMALVDGKAVCVIVPSDHEVSMKKLAAAFG
GKSAQMMKPADAERMSGYKVGGISPFGQMKKVPAAMEEQAVHHDAVFINGGQRGLQVRLNPREAASLLNAAVVSLVA
>Mature_156_residues
SKATRATKMLEQAKIAFTVHSYDYDPDADRIGIQAAEALGEAPERVLKTLMALVDGKAVCVIVPSDHEVSMKKLAAAFGG
KSAQMMKPADAERMSGYKVGGISPFGQMKKVPAAMEEQAVHHDAVFINGGQRGLQVRLNPREAASLLNAAVVSLVA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=149, Percent_Identity=38.255033557047, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16694; Mature: 16562

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKATRATKMLEQAKIAFTVHSYDYDPDADRIGIQAAEALGEAPERVLKTLMALVDGKAV
CCCHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEE
CVIVPSDHEVSMKKLAAAFGGKSAQMMKPADAERMSGYKVGGISPFGQMKKVPAAMEEQA
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHCCHHHHHHH
VHHDAVFINGGQRGLQVRLNPREAASLLNAAVVSLVA
HHCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKATRATKMLEQAKIAFTVHSYDYDPDADRIGIQAAEALGEAPERVLKTLMALVDGKAV
CCHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEE
CVIVPSDHEVSMKKLAAAFGGKSAQMMKPADAERMSGYKVGGISPFGQMKKVPAAMEEQA
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHCCHHHHHHH
VHHDAVFINGGQRGLQVRLNPREAASLLNAAVVSLVA
HHCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]