| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is rbsA2 [H]
Identifier: 154246356
GI number: 154246356
Start: 2696884
End: 2697705
Strand: Direct
Name: rbsA2 [H]
Synonym: Xaut_2415
Alternate gene names: 154246356
Gene position: 2696884-2697705 (Clockwise)
Preceding gene: 154246355
Following gene: 154246364
Centisome position: 50.8
GC content: 69.46
Gene sequence:
>822_bases ATGAGCACGAATACTTTCAGCACGAGCCATCTCGGCACGGACACCGGCGTGCGCCGGCCGCTCATCGAGGCGCGGGGCCT GGTCAAGCGCTACGGCCGTGTCACGGCCCTCGACCATGCGGATTTCGACCTCTATCCGGGGGAGATCCTGGCGGTGATCG GCGACAATGGCGCCGGCAAGTCCTCCCTCATCCGCGCCCTTTCCGGGGCGCTGGTGCCGGACGAGGGCGAGATCCGCTTC GACGGCAAGCCGGTGCAGTTCCGCTCCCCCCTCGACGCGCAGGCGGCGGGGATCGAGACCGTCTACCAGTCACTGGCGCT GGCGCCGGGCCTGTCGATTGCCGACAACCTGTTCCTCGGCCGCGAGCTGCGCAAGCCGGGGGTGCTTGGCTCGGTGTTCC GCATGCTCGACCGCAAGACCATGCAGCGCATGGCCCGCGAGAAGCTCACCGAGCTGGGGCTGATGACGGTGCAGTCCATC AACCAGCCGGTGGAGACGCTCTCGGGCGGCCAGCGGCAGGGCATCGCGGTGGCCCGCGCTACCGCCTTCGGCTCACGGGT GGTGATCCTCGACGAGCCCACAGCTGCGCTGGGCGTGAAGGAATCCCGCCGGGTGCTGGAGCTGATCCTCGACGTGCGCC GGCGCGGCATCGCCGTGGTGCTCATCAGCCACAACATGCCCCATGTGTTCGAGATCGCCGACCGCATTCACATCCACCGG CTGGGGCGGCGGCTCACCGTGGTCCAGCCCTCGACCTGCACCATGTCGGACGCGGTGGCGCTGATGACCGGCGCCCGCGC GCCACAGGAACTGGCCGCCTGA
Upstream 100 bases:
>100_bases TCGCTCTGTCGGGGGTGGATGTGCTGTGGCAGGAGTTTGCCGTGGGCAGCCTCATCATCGTCGCGGTCACCCTCGACCAG TGGATCCGGAAGGTGTCGGC
Downstream 100 bases:
>100_bases GGCCGGGGCGGTCATGGCGGCGTTCCGCGCCGCCTGGATCGTCCCGCGCGGGGCGGGCAGGTCATGGCACAAGCGCGGAA ACAAGAGCCCGGATCACGGC
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MSTNTFSTSHLGTDTGVRRPLIEARGLVKRYGRVTALDHADFDLYPGEILAVIGDNGAGKSSLIRALSGALVPDEGEIRF DGKPVQFRSPLDAQAAGIETVYQSLALAPGLSIADNLFLGRELRKPGVLGSVFRMLDRKTMQRMAREKLTELGLMTVQSI NQPVETLSGGQRQGIAVARATAFGSRVVILDEPTAALGVKESRRVLELILDVRRRGIAVVLISHNMPHVFEIADRIHIHR LGRRLTVVQPSTCTMSDAVALMTGARAPQELAA
Sequences:
>Translated_273_residues MSTNTFSTSHLGTDTGVRRPLIEARGLVKRYGRVTALDHADFDLYPGEILAVIGDNGAGKSSLIRALSGALVPDEGEIRF DGKPVQFRSPLDAQAAGIETVYQSLALAPGLSIADNLFLGRELRKPGVLGSVFRMLDRKTMQRMAREKLTELGLMTVQSI NQPVETLSGGQRQGIAVARATAFGSRVVILDEPTAALGVKESRRVLELILDVRRRGIAVVLISHNMPHVFEIADRIHIHR LGRRLTVVQPSTCTMSDAVALMTGARAPQELAA >Mature_272_residues STNTFSTSHLGTDTGVRRPLIEARGLVKRYGRVTALDHADFDLYPGEILAVIGDNGAGKSSLIRALSGALVPDEGEIRFD GKPVQFRSPLDAQAAGIETVYQSLALAPGLSIADNLFLGRELRKPGVLGSVFRMLDRKTMQRMAREKLTELGLMTVQSIN QPVETLSGGQRQGIAVARATAFGSRVVILDEPTAALGVKESRRVLELILDVRRRGIAVVLISHNMPHVFEIADRIHIHRL GRRLTVVQPSTCTMSDAVALMTGARAPQELAA
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=29.3333333333333, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=28.6324786324786, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI47078218, Length=228, Percent_Identity=30.2631578947368, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI45446740, Length=228, Percent_Identity=30.2631578947368, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=28.3018867924528, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=28.3018867924528, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI153792144, Length=193, Percent_Identity=30.0518134715026, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI150417984, Length=233, Percent_Identity=30.0429184549356, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI31657092, Length=236, Percent_Identity=26.6949152542373, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI116734710, Length=205, Percent_Identity=27.3170731707317, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27436953, Length=227, Percent_Identity=27.3127753303965, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI157502203, Length=213, Percent_Identity=29.5774647887324, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27262624, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI27262626, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI157502201, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27477115, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9665248, Length=206, Percent_Identity=30.5825242718447, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI42741659, Length=209, Percent_Identity=29.1866028708134, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI255708477, Length=211, Percent_Identity=25.5924170616114, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI48995001, Length=250, Percent_Identity=35.2, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1790190, Length=246, Percent_Identity=34.5528455284553, Blast_Score=152, Evalue=3e-38, Organism=Escherichia coli, GI1788472, Length=252, Percent_Identity=33.7301587301587, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1788210, Length=224, Percent_Identity=32.5892857142857, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1789991, Length=247, Percent_Identity=33.1983805668016, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788897, Length=257, Percent_Identity=37.3540856031128, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1790525, Length=245, Percent_Identity=32.2448979591837, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1787792, Length=254, Percent_Identity=32.2834645669291, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=32.6271186440678, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI145693107, Length=240, Percent_Identity=35, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789962, Length=241, Percent_Identity=33.195020746888, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787712, Length=244, Percent_Identity=29.9180327868852, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=28.1938325991189, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790544, Length=226, Percent_Identity=31.4159292035398, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.5936073059361, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=26.8292682926829, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1790162, Length=230, Percent_Identity=31.7391304347826, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=28.3261802575107, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=28.6384976525822, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=29.2576419213974, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=32.2115384615385, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=29.0178571428571, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787089, Length=243, Percent_Identity=30.0411522633745, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=31.25, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=30.1310043668122, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786803, Length=240, Percent_Identity=27.5, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=26.8085106382979, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787758, Length=211, Percent_Identity=29.3838862559242, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=30.3964757709251, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=29.6803652968037, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=26.4069264069264, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790534, Length=215, Percent_Identity=28.8372093023256, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=29.8642533936652, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=24.5535714285714, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI87081782, Length=231, Percent_Identity=27.7056277056277, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=28.310502283105, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI87082268, Length=219, Percent_Identity=26.027397260274, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=27.5109170305677, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788506, Length=235, Percent_Identity=30.2127659574468, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787547, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994883, Length=229, Percent_Identity=28.3842794759825, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=223, Percent_Identity=27.3542600896861, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87082267, Length=211, Percent_Identity=28.9099526066351, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786698, Length=240, Percent_Identity=26.25, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1787164, Length=226, Percent_Identity=27.8761061946903, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789586, Length=221, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1789873, Length=195, Percent_Identity=28.7179487179487, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786703, Length=186, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786653, Length=229, Percent_Identity=27.5109170305677, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786253, Length=190, Percent_Identity=28.4210526315789, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787112, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=27.4774774774775, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787143, Length=230, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=28.310502283105, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082064, Length=212, Percent_Identity=29.7169811320755, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789963, Length=245, Percent_Identity=25.7142857142857, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787759, Length=226, Percent_Identity=27.8761061946903, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1788644, Length=213, Percent_Identity=27.2300469483568, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71992290, Length=214, Percent_Identity=29.4392523364486, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71984940, Length=200, Percent_Identity=29.5, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17541710, Length=215, Percent_Identity=31.1627906976744, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71996809, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193211015, Length=212, Percent_Identity=28.3018867924528, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193211017, Length=212, Percent_Identity=28.3018867924528, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24666092, Length=221, Percent_Identity=25.3393665158371, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI17136592, Length=240, Percent_Identity=30.4166666666667, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28571209, Length=261, Percent_Identity=26.4367816091954, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI116007184, Length=222, Percent_Identity=28.8288288288288, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221500365, Length=222, Percent_Identity=28.8288288288288, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24659289, Length=235, Percent_Identity=27.2340425531915, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574259, Length=228, Percent_Identity=29.3859649122807, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643674, Length=238, Percent_Identity=21.0084033613445, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI17136662, Length=231, Percent_Identity=27.7056277056277, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24648314, Length=224, Percent_Identity=24.5535714285714, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 29539; Mature: 29407
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNTFSTSHLGTDTGVRRPLIEARGLVKRYGRVTALDHADFDLYPGEILAVIGDNGAGK CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCH SSLIRALSGALVPDEGEIRFDGKPVQFRSPLDAQAAGIETVYQSLALAPGLSIADNLFLG HHHHHHHHCCCCCCCCCEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH RELRKPGVLGSVFRMLDRKTMQRMAREKLTELGLMTVQSINQPVETLSGGQRQGIAVARA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE TAFGSRVVILDEPTAALGVKESRRVLELILDVRRRGIAVVLISHNMPHVFEIADRIHIHR CCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH LGRRLTVVQPSTCTMSDAVALMTGARAPQELAA HCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCC >Mature Secondary Structure STNTFSTSHLGTDTGVRRPLIEARGLVKRYGRVTALDHADFDLYPGEILAVIGDNGAGK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCCCCH SSLIRALSGALVPDEGEIRFDGKPVQFRSPLDAQAAGIETVYQSLALAPGLSIADNLFLG HHHHHHHHCCCCCCCCCEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH RELRKPGVLGSVFRMLDRKTMQRMAREKLTELGLMTVQSINQPVETLSGGQRQGIAVARA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE TAFGSRVVILDEPTAALGVKESRRVLELILDVRRRGIAVVLISHNMPHVFEIADRIHIHR CCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHH LGRRLTVVQPSTCTMSDAVALMTGARAPQELAA HCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]