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The map label for this gene is nodD1 [H]

Identifier: 154246328

GI number: 154246328

Start: 2665051

End: 2665962

Strand: Reverse

Name: nodD1 [H]

Synonym: Xaut_2387

Alternate gene names: 154246328

Gene position: 2665962-2665051 (Counterclockwise)

Preceding gene: 154246331

Following gene: 154246324

Centisome position: 50.22

GC content: 60.42

Gene sequence:

>912_bases
ATGCGATTTGAACGGCTTGATCTCAACCTGATCGTCCTGTTCGATTCCCTGCTGAAGTCTGAGAATGTGAGCCGAACGGC
CAGACAGCTTCACTTGACGCAGCCGACCGTGAGCAACGCCCTCGCGCGGCTTCGCCGTCACTTCGACGACGAGCTGTTCG
TCATGGTTGGCCGCAAGCTGGAGCCCACGCCGCTTGCCATCGACCTACGCGAACCTGTCGCGAAGTTCATCCATTTGTCG
CGCGTGATCGCGCAGAAGCGGAGCGTGTTCGACCCCGAGACGACCGAACGCACCTTCTCCATCGTTGCCTCCGACTATAT
CGCTTCGGTTCTCCTCACGCGGGTCGGGCGCCGGCTGGTCTCGGCCACCTCACATGTCAATCTTCGGCATGTGCCCATCT
CCGCCGCGGCCATCCAGAAATTTCTGCAGGGCACTTACGATTTTCTCGTCGCGCCCGGCTATGTGTATCAAAACTGGCCC
AACACCAAATTCCTCTTCGCGGACCGCTTCGTCGTGATTGCCTGTCGGGATAACACCGAGGTCGGCAGCCAGTTGACGCT
CGACGAATTCCTCAACCATCCCCTGGCTGTCTGTCGCTTCGGCGATCTGAGCCAGCCCTCGGTGGTCGAGGAATTCTTGA
TGAAACATGACTGCGAGCACTCCGCGCGCGTCGAGTGCGAAAGCTTCGGCCTGTTAGTCGATTACATCGTCGGCACGCCG
ATGCTCGCGAGCCTTCCGCTGAGCTATGCAAGGATGAGGGTCCAGCGGTCGCCCATACGCCTCGTCACGCCAATGTTCGA
CATGCCGGTGATCAGGCAGCAGATCCTCTGGCACGGCTATTCCGAAAGCGAGCCGGCCGCGCGCTTGGCGCTCGAGATGA
TCGAGCAGGAGGCGGCTGACCTCGGCGAATGA

Upstream 100 bases:

>100_bases
CATATTCCGATTTTCTATGGCCGGCTGAGGCTTGCGGGAGGGGCTTGGTGGGGCGCAGAAAAACGAGAAACGAAAATCAA
ACAACAAAGGGAGGCCCCTG

Downstream 100 bases:

>100_bases
GCCATAGTCTTTTCGGTCAGTGCCGGTTCTTTGTTTTATATGAAGGCGTTTCCATTTGAACATGGCGCCCTCCACGGCAG
CTTCCACGGCGGCATCGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRFERLDLNLIVLFDSLLKSENVSRTARQLHLTQPTVSNALARLRRHFDDELFVMVGRKLEPTPLAIDLREPVAKFIHLS
RVIAQKRSVFDPETTERTFSIVASDYIASVLLTRVGRRLVSATSHVNLRHVPISAAAIQKFLQGTYDFLVAPGYVYQNWP
NTKFLFADRFVVIACRDNTEVGSQLTLDEFLNHPLAVCRFGDLSQPSVVEEFLMKHDCEHSARVECESFGLLVDYIVGTP
MLASLPLSYARMRVQRSPIRLVTPMFDMPVIRQQILWHGYSESEPAARLALEMIEQEAADLGE

Sequences:

>Translated_303_residues
MRFERLDLNLIVLFDSLLKSENVSRTARQLHLTQPTVSNALARLRRHFDDELFVMVGRKLEPTPLAIDLREPVAKFIHLS
RVIAQKRSVFDPETTERTFSIVASDYIASVLLTRVGRRLVSATSHVNLRHVPISAAAIQKFLQGTYDFLVAPGYVYQNWP
NTKFLFADRFVVIACRDNTEVGSQLTLDEFLNHPLAVCRFGDLSQPSVVEEFLMKHDCEHSARVECESFGLLVDYIVGTP
MLASLPLSYARMRVQRSPIRLVTPMFDMPVIRQQILWHGYSESEPAARLALEMIEQEAADLGE
>Mature_303_residues
MRFERLDLNLIVLFDSLLKSENVSRTARQLHLTQPTVSNALARLRRHFDDELFVMVGRKLEPTPLAIDLREPVAKFIHLS
RVIAQKRSVFDPETTERTFSIVASDYIASVLLTRVGRRLVSATSHVNLRHVPISAAAIQKFLQGTYDFLVAPGYVYQNWP
NTKFLFADRFVVIACRDNTEVGSQLTLDEFLNHPLAVCRFGDLSQPSVVEEFLMKHDCEHSARVECESFGLLVDYIVGTP
MLASLPLSYARMRVQRSPIRLVTPMFDMPVIRQQILWHGYSESEPAARLALEMIEQEAADLGE

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=210, Percent_Identity=29.5238095238095, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34486; Mature: 34486

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFERLDLNLIVLFDSLLKSENVSRTARQLHLTQPTVSNALARLRRHFDDELFVMVGRKL
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCC
EPTPLAIDLREPVAKFIHLSRVIAQKRSVFDPETTERTFSIVASDYIASVLLTRVGRRLV
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SATSHVNLRHVPISAAAIQKFLQGTYDFLVAPGYVYQNWPNTKFLFADRFVVIACRDNTE
HHHCCCEEEECCCCHHHHHHHHHCHHHHHCCCCCEECCCCCCEEEEECCEEEEEECCCCC
VGSQLTLDEFLNHPLAVCRFGDLSQPSVVEEFLMKHDCEHSARVECESFGLLVDYIVGTP
CCCEECHHHHHCCCEEEHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
MLASLPLSYARMRVQRSPIRLVTPMFDMPVIRQQILWHGYSESEPAARLALEMIEQEAAD
HHHHCCHHHHHHHHHCCCCEEECCHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
LGE
CCC
>Mature Secondary Structure
MRFERLDLNLIVLFDSLLKSENVSRTARQLHLTQPTVSNALARLRRHFDDELFVMVGRKL
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCC
EPTPLAIDLREPVAKFIHLSRVIAQKRSVFDPETTERTFSIVASDYIASVLLTRVGRRLV
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SATSHVNLRHVPISAAAIQKFLQGTYDFLVAPGYVYQNWPNTKFLFADRFVVIACRDNTE
HHHCCCEEEECCCCHHHHHHHHHCHHHHHCCCCCEECCCCCCEEEEECCEEEEEECCCCC
VGSQLTLDEFLNHPLAVCRFGDLSQPSVVEEFLMKHDCEHSARVECESFGLLVDYIVGTP
CCCEECHHHHHCCCEEEHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
MLASLPLSYARMRVQRSPIRLVTPMFDMPVIRQQILWHGYSESEPAARLALEMIEQEAAD
HHHHCCHHHHHHHHHCCCCEEECCHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
LGE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]