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The map label for this gene is 154246321

Identifier: 154246321

GI number: 154246321

Start: 2657516

End: 2658130

Strand: Direct

Name: 154246321

Synonym: Xaut_2379

Alternate gene names: NA

Gene position: 2657516-2658130 (Clockwise)

Preceding gene: 154246320

Following gene: 154246322

Centisome position: 50.06

GC content: 66.34

Gene sequence:

>615_bases
ATGTCCCAGATCAAGCTGTCGCAACGCACCAAGATCATCGCCCTGTTCTGCGCCTTCGCGGCTGGCGCCCTCGTCATGGT
CACCGCCGTGACCATGCTGGTGGGCAGTCCGGCGCCGCGGGTGACCAGCACCGGCACCGCCGCCGTGGGCGGGCCGTTCA
AGCTGGTGGACCAGACCGGCGCCCCCGTCACCGAAGCCGCGCTGAAGGGCAAACCGAGTCTGATCTTCTTCGGCTTCACC
CATTGCCCGGACGTGTGCCCCACCGCCCTGTTCGAGATGTCGGAGATCCTCACCGCCCTCGGCCCGGACGCGGGCAAGGC
GCAGGTGTTCTTCGTGACCGTCGACCCCGAGCGCGATACGCCGGAGGCGCTGAAATCCTATCTGTCGAGCTTTGCCCCGC
AGATCCGCGGCCTCACCGGCACGCCGGAGGCGGTGGATGCGATCAAGAAGGAATACCGGGTCTATTCCAAGAAGGTGCCG
CTGACCGGCGGGGACTACACCATGGACCACACGGCGGTGGTCTATCTCATGGACAAGTCCGGCACCTTCGTCGCCCCGTT
CAATTCCAAGCGGCCGCCGGCCGACGCCGCGGCGGAGCTGAAGCGCTATTTATGA

Upstream 100 bases:

>100_bases
GCATCGCCGCCTGCCTGTGACCCCCCACCCGGCGCGGGTTCGCTGACGCCCTGGCGCAACCACGTCCGGACCTGATCGCA
AAGGCCAAGATCGCCAGCCC

Downstream 100 bases:

>100_bases
GGCCTGACGCCGGCCGGGTCGGCTGAACGCCGCGCCCGGGCGCGGCACCGGCCGCCCTGAACCGGCCACGGCCGCTCGCA
GGCGTGTGCCCATGTCCCGT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSQIKLSQRTKIIALFCAFAAGALVMVTAVTMLVGSPAPRVTSTGTAAVGGPFKLVDQTGAPVTEAALKGKPSLIFFGFT
HCPDVCPTALFEMSEILTALGPDAGKAQVFFVTVDPERDTPEALKSYLSSFAPQIRGLTGTPEAVDAIKKEYRVYSKKVP
LTGGDYTMDHTAVVYLMDKSGTFVAPFNSKRPPADAAAELKRYL

Sequences:

>Translated_204_residues
MSQIKLSQRTKIIALFCAFAAGALVMVTAVTMLVGSPAPRVTSTGTAAVGGPFKLVDQTGAPVTEAALKGKPSLIFFGFT
HCPDVCPTALFEMSEILTALGPDAGKAQVFFVTVDPERDTPEALKSYLSSFAPQIRGLTGTPEAVDAIKKEYRVYSKKVP
LTGGDYTMDHTAVVYLMDKSGTFVAPFNSKRPPADAAAELKRYL
>Mature_203_residues
SQIKLSQRTKIIALFCAFAAGALVMVTAVTMLVGSPAPRVTSTGTAAVGGPFKLVDQTGAPVTEAALKGKPSLIFFGFTH
CPDVCPTALFEMSEILTALGPDAGKAQVFFVTVDPERDTPEALKSYLSSFAPQIRGLTGTPEAVDAIKKEYRVYSKKVPL
TGGDYTMDHTAVVYLMDKSGTFVAPFNSKRPPADAAAELKRYL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=171, Percent_Identity=38.0116959064327, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI281182727, Length=169, Percent_Identity=35.5029585798817, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI281182722, Length=169, Percent_Identity=35.5029585798817, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI281182716, Length=169, Percent_Identity=35.5029585798817, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI153791313, Length=169, Percent_Identity=35.5029585798817, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17531419, Length=163, Percent_Identity=36.1963190184049, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6319498, Length=189, Percent_Identity=39.1534391534392, Blast_Score=137, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6319511, Length=180, Percent_Identity=42.7777777777778, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI19920710, Length=164, Percent_Identity=39.0243902439024, Blast_Score=128, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21684; Mature: 21553

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIKLSQRTKIIALFCAFAAGALVMVTAVTMLVGSPAPRVTSTGTAAVGGPFKLVDQTG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
APVTEAALKGKPSLIFFGFTHCPDVCPTALFEMSEILTALGPDAGKAQVFFVTVDPERDT
CCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
PEALKSYLSSFAPQIRGLTGTPEAVDAIKKEYRVYSKKVPLTGGDYTMDHTAVVYLMDKS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEEEEEEEECC
GTFVAPFNSKRPPADAAAELKRYL
CCEEECCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SQIKLSQRTKIIALFCAFAAGALVMVTAVTMLVGSPAPRVTSTGTAAVGGPFKLVDQTG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
APVTEAALKGKPSLIFFGFTHCPDVCPTALFEMSEILTALGPDAGKAQVFFVTVDPERDT
CCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
PEALKSYLSSFAPQIRGLTGTPEAVDAIKKEYRVYSKKVPLTGGDYTMDHTAVVYLMDKS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEEEEEEEECC
GTFVAPFNSKRPPADAAAELKRYL
CCEEECCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA