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The map label for this gene is degT [H]

Identifier: 154246280

GI number: 154246280

Start: 2612197

End: 2613381

Strand: Reverse

Name: degT [H]

Synonym: Xaut_2338

Alternate gene names: 154246280

Gene position: 2613381-2612197 (Counterclockwise)

Preceding gene: 154246281

Following gene: 154246277

Centisome position: 49.23

GC content: 68.78

Gene sequence:

>1185_bases
ATGACGTCTCCCGCGACGGCCAAGCCCACCACGGCTTCCAGTACAGCGAACAACGCCCCCATCCCCTTCATCGACCTTGC
CGCCCAGCGCGCGCGCATCGGCGCCCGCATCGACGAGAAGGTGCTGGACGTGCTCGCTTCCTGCCGCTTCGTGAACGGGC
CGGAAGTGGGCGCCTTCGAGGAGCAGCTCGCCGCCTTCGCCGGGGCCAAACATGCCGTCTCGTGCTCCAGCGGCACCGAC
GCGCTGGCGCTGCTGCTGATGGCCTGGGGCGTGAAGGCGGGGGACGCCGTGTTCTGCCCGGCCTTCACCTTCTGCGCCAC
CGCCGAGGTGGTGCCCTATGTGGGCGCGACCCCGGTGTTCGTGGACGTGAAGGCGGACACCTTCAACATGGACCCCGAAA
GCCTGGAGCAGGCCATTGCGGTGGCCGTCGAGCAGGGGCTGACCCCACGCGTGGTGATTCCGGTGGATCTGTTCGGCCAG
CCGGCGGACTATGACGCCATCCTGCCCATCGCCGAGAAGCATGGCCTGAAGGTTTTGTGCGACACCGCCCAGGGCTTCGG
CGGCACCTGGAACAACAAGCGCACCGGCTCCATCGGCGATGCCACCGCCACCTCCTTCTTCCCGGCCAAGCCGCTCGGCT
GCTACGGCGACGGCGGCGCCATCCTCACCGACGACGCGGAGCTGGTCACCGTGCTCAAGAGCCTGCGCGAGCACGGCCAG
GGCGTGGACAAGTACCAGAACGTGCGCATCGGCATGACCGCCCGCCTCGACACCATCCAGGCGGCGGTGCTGATCGAGAA
GCTCGCCATCTTCGAGGAGGAGATCGCGGCGCGTGACCGGGTGGCGCGGCGCTACAACGAGCTGCTGAAGGATGTCGCCA
CTGTGCCGGTGGTGGACGCGCGCGCCACCTCAGTGTGGGCGCAATACACCATCCGCCTCGCCCCCGGCGTGCGCGACGGC
CTCGCCGACAAGCTGAAGGCCCAGGGCGTACCCACGGCGGTGTATTACCGCCTGCCCATGCACCTGCAGCCGGCCTACAA
GCACTATCCCTCCGCCGGCGCCATCCTGCCGGTGTGCGAGACCCTGGCGGAGGAGGTCATCTCCCTGCCCATGCACGCCT
ATCTCGACGAGACGACGCAGGACCGCATCGTCGCGGCGGTGAAGCAGGCCCTCGCCGAAGGGTGA

Upstream 100 bases:

>100_bases
CCAGCCCGCGCGGCGCCTGTCGAAGGGCGGGTCCGTTCGTAAAAGCCCGCCGCATCCGCGCCATTCCGCCCGTCCGACGG
GCACCTGACAGGGATCATCC

Downstream 100 bases:

>100_bases
GGGTGCGGCCACACAAGCAAAGACCACCGGAAGCGGGGGCTTCCGGTGGTCTTTTCGTTTGGGCCGACCGTCCGGCTCAG
CCGTTCAAGCGAGCCCCGCC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTSPATAKPTTASSTANNAPIPFIDLAAQRARIGARIDEKVLDVLASCRFVNGPEVGAFEEQLAAFAGAKHAVSCSSGTD
ALALLLMAWGVKAGDAVFCPAFTFCATAEVVPYVGATPVFVDVKADTFNMDPESLEQAIAVAVEQGLTPRVVIPVDLFGQ
PADYDAILPIAEKHGLKVLCDTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDAELVTVLKSLREHGQ
GVDKYQNVRIGMTARLDTIQAAVLIEKLAIFEEEIAARDRVARRYNELLKDVATVPVVDARATSVWAQYTIRLAPGVRDG
LADKLKAQGVPTAVYYRLPMHLQPAYKHYPSAGAILPVCETLAEEVISLPMHAYLDETTQDRIVAAVKQALAEG

Sequences:

>Translated_394_residues
MTSPATAKPTTASSTANNAPIPFIDLAAQRARIGARIDEKVLDVLASCRFVNGPEVGAFEEQLAAFAGAKHAVSCSSGTD
ALALLLMAWGVKAGDAVFCPAFTFCATAEVVPYVGATPVFVDVKADTFNMDPESLEQAIAVAVEQGLTPRVVIPVDLFGQ
PADYDAILPIAEKHGLKVLCDTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDAELVTVLKSLREHGQ
GVDKYQNVRIGMTARLDTIQAAVLIEKLAIFEEEIAARDRVARRYNELLKDVATVPVVDARATSVWAQYTIRLAPGVRDG
LADKLKAQGVPTAVYYRLPMHLQPAYKHYPSAGAILPVCETLAEEVISLPMHAYLDETTQDRIVAAVKQALAEG
>Mature_393_residues
TSPATAKPTTASSTANNAPIPFIDLAAQRARIGARIDEKVLDVLASCRFVNGPEVGAFEEQLAAFAGAKHAVSCSSGTDA
LALLLMAWGVKAGDAVFCPAFTFCATAEVVPYVGATPVFVDVKADTFNMDPESLEQAIAVAVEQGLTPRVVIPVDLFGQP
ADYDAILPIAEKHGLKVLCDTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDAELVTVLKSLREHGQG
VDKYQNVRIGMTARLDTIQAAVLIEKLAIFEEEIAARDRVARRYNELLKDVATVPVVDARATSVWAQYTIRLAPGVRDGL
ADKLKAQGVPTAVYYRLPMHLQPAYKHYPSAGAILPVCETLAEEVISLPMHAYLDETTQDRIVAAVKQALAEG

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=369, Percent_Identity=31.9783197831978, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI2367285, Length=328, Percent_Identity=29.2682926829268, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41902; Mature: 41771

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPATAKPTTASSTANNAPIPFIDLAAQRARIGARIDEKVLDVLASCRFVNGPEVGAFE
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHH
EQLAAFAGAKHAVSCSSGTDALALLLMAWGVKAGDAVFCPAFTFCATAEVVPYVGATPVF
HHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCEE
VDVKADTFNMDPESLEQAIAVAVEQGLTPRVVIPVDLFGQPADYDAILPIAEKHGLKVLC
EEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCCCCCCCHHHHCCCEEEE
DTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDAELVTVLKSLREHGQ
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHCC
GVDKYQNVRIGMTARLDTIQAAVLIEKLAIFEEEIAARDRVARRYNELLKDVATVPVVDA
CCCHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RATSVWAQYTIRLAPGVRDGLADKLKAQGVPTAVYYRLPMHLQPAYKHYPSAGAILPVCE
HHHHHEEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHHH
TLAEEVISLPMHAYLDETTQDRIVAAVKQALAEG
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSPATAKPTTASSTANNAPIPFIDLAAQRARIGARIDEKVLDVLASCRFVNGPEVGAFE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHH
EQLAAFAGAKHAVSCSSGTDALALLLMAWGVKAGDAVFCPAFTFCATAEVVPYVGATPVF
HHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCEE
VDVKADTFNMDPESLEQAIAVAVEQGLTPRVVIPVDLFGQPADYDAILPIAEKHGLKVLC
EEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCCCCCCCHHHHCCCEEEE
DTAQGFGGTWNNKRTGSIGDATATSFFPAKPLGCYGDGGAILTDDAELVTVLKSLREHGQ
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHCC
GVDKYQNVRIGMTARLDTIQAAVLIEKLAIFEEEIAARDRVARRYNELLKDVATVPVVDA
CCCHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RATSVWAQYTIRLAPGVRDGLADKLKAQGVPTAVYYRLPMHLQPAYKHYPSAGAILPVCE
HHHHHEEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHHH
TLAEEVISLPMHAYLDETTQDRIVAAVKQALAEG
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]