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The map label for this gene is sbcD [C]

Identifier: 154246245

GI number: 154246245

Start: 2571611

End: 2572732

Strand: Reverse

Name: sbcD [C]

Synonym: Xaut_2303

Alternate gene names: 154246245

Gene position: 2572732-2571611 (Counterclockwise)

Preceding gene: 154246246

Following gene: 154246244

Centisome position: 48.46

GC content: 73.44

Gene sequence:

>1122_bases
ATGCGTTTCATCCACACCTCGGACTGGCAATTGGGCAAGCCGTTCGGGCGCGCGCCGGAAGAGGCCCGCGCGGCCCTTCA
GGAAGCCCGCCTCGGCGCCATAGACGCCCTCGCCCGCGCCGCGCAGGCCCACGACGCACCGCTGGTGCTGGTGGCAGGCG
ACGTGTTCGACAGCGCCGAGCCCGGCGACCGGGTCTACCGGCAGGCGCTCTCGCGCATGCGGCAGGCGGCGAACGTCACC
TTCGTTCTGCTGCCCGGCAACCACGACCCCCTCCGCGCCGACGGCCTGTGGACCCGTCTCAAGGCGGAGACGCCGCCCAA
CGTCATCGCCGCCATCGCGGCCGAGCCCATCGCCCTCGGCGAAGCCGCCGTGCTGCTCCCGGCCCCGCTCACCCACAAGC
GCAGCCTCTCCGATCCCACGGCATGGTTCGATGCGGCGGAAACACCGCCCGGCGCGCTGCGCATCGGGCTGGCCCATGGC
TCGGTGCAGGCCTTCGGCTCCGATCCCGACACCAACCTCCTCGCCCCCGACCGCGCCCGGCGCGCCGGCCTCGCCTATCT
GGCGCTGGGCGACTGGCACGGGCGGCTCAGAATAGACGAGCGCACCCACTACAGCGGCACGCCGGAGCCCGACGATTTCG
GCCGCGAGGCCACGGGCCTTGCCCTGCTGGTGGAACTGGCCGGCCCCGGCGCGCCGCCTCAGGTCACCGACCTTGCCATC
GGCCGCCACCACTGGATCGAGGCAGACTGGAACCTCGCCGCAGCCTCGGATCTCGACGCGCTCACGGCCCGCCTTGCCCT
AGGGATCGCGCGGCAGGACGTGGTGGCGCGGCTGCACGTGAGTGGCCTCCTCTCCCTCGGCGACAAGGTAGCGGTGCGCC
GCCGGCTGGAGGACGGCCTCGCCCACGAGCTGCGCTGGCTCGACCTCGATCTCGGCGGTCTCGTCACCCGCCCCACCGAC
ACCGACCTTGCCGAAATCGACGCCTTCGGCGACCTGCGCGCTGCCGCCGAGCGCCTCAACGCCATGGCGGCCGAAGGCGG
CGCCGAGGGGCGCCTCGCCGCTGCCGCGCTGGAGCGGCTTTACGTGGAGCATCATCGGGCGCAGCGGCCGGGAGAGGCCT
GA

Upstream 100 bases:

>100_bases
GCGCAACCGCAAGTGTTGCGTGCAGTTTTCCCGCGCCCCGCCGCGCGGCCTTGCCTTGCCGGCGGCGCGGGCGTCTAAGC
TCCCGGCCCGGGAGGGCCGC

Downstream 100 bases:

>100_bases
TGCGCATCCGCCGCCTGACCATCGAGAATTTCCGCAAGTTCCGCTCTCCGGTGGTGCTGGAGGGCTTCGCCGACGGGCTC
AACCTCGTCTGTGAGCCCAA

Product: metallophosphoesterase

Products: NA

Alternate protein names: DNA Repair Exonuclease; Exonuclease; Exonuclease SbcD; Ser/Thr Protein Phosphatase Family Protein; Calcineurin-Like Phosphoesterase Family; DNA Repair Exonuclease SbcD

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRFIHTSDWQLGKPFGRAPEEARAALQEARLGAIDALARAAQAHDAPLVLVAGDVFDSAEPGDRVYRQALSRMRQAANVT
FVLLPGNHDPLRADGLWTRLKAETPPNVIAAIAAEPIALGEAAVLLPAPLTHKRSLSDPTAWFDAAETPPGALRIGLAHG
SVQAFGSDPDTNLLAPDRARRAGLAYLALGDWHGRLRIDERTHYSGTPEPDDFGREATGLALLVELAGPGAPPQVTDLAI
GRHHWIEADWNLAAASDLDALTARLALGIARQDVVARLHVSGLLSLGDKVAVRRRLEDGLAHELRWLDLDLGGLVTRPTD
TDLAEIDAFGDLRAAAERLNAMAAEGGAEGRLAAAALERLYVEHHRAQRPGEA

Sequences:

>Translated_373_residues
MRFIHTSDWQLGKPFGRAPEEARAALQEARLGAIDALARAAQAHDAPLVLVAGDVFDSAEPGDRVYRQALSRMRQAANVT
FVLLPGNHDPLRADGLWTRLKAETPPNVIAAIAAEPIALGEAAVLLPAPLTHKRSLSDPTAWFDAAETPPGALRIGLAHG
SVQAFGSDPDTNLLAPDRARRAGLAYLALGDWHGRLRIDERTHYSGTPEPDDFGREATGLALLVELAGPGAPPQVTDLAI
GRHHWIEADWNLAAASDLDALTARLALGIARQDVVARLHVSGLLSLGDKVAVRRRLEDGLAHELRWLDLDLGGLVTRPTD
TDLAEIDAFGDLRAAAERLNAMAAEGGAEGRLAAAALERLYVEHHRAQRPGEA
>Mature_373_residues
MRFIHTSDWQLGKPFGRAPEEARAALQEARLGAIDALARAAQAHDAPLVLVAGDVFDSAEPGDRVYRQALSRMRQAANVT
FVLLPGNHDPLRADGLWTRLKAETPPNVIAAIAAEPIALGEAAVLLPAPLTHKRSLSDPTAWFDAAETPPGALRIGLAHG
SVQAFGSDPDTNLLAPDRARRAGLAYLALGDWHGRLRIDERTHYSGTPEPDDFGREATGLALLVELAGPGAPPQVTDLAI
GRHHWIEADWNLAAASDLDALTARLALGIARQDVVARLHVSGLLSLGDKVAVRRRLEDGLAHELRWLDLDLGGLVTRPTD
TDLAEIDAFGDLRAAAERLNAMAAEGGAEGRLAAAALERLYVEHHRAQRPGEA

Specific function: Sbccd Cleaves DNA Hairpin Structures. These Structures Can Inhibit DNA Replication And Are Intermediates In Certain DNA Recombination Reactions. The Complex Acts As A 3'->5' Double Strand Exonuclease That Can Open Hairpins. It Also Has A 5' Single-Strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39891; Mature: 39891

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFIHTSDWQLGKPFGRAPEEARAALQEARLGAIDALARAAQAHDAPLVLVAGDVFDSAE
CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
PGDRVYRQALSRMRQAANVTFVLLPGNHDPLRADGLWTRLKAETPPNVIAAIAAEPIALG
CHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCHHCC
EAAVLLPAPLTHKRSLSDPTAWFDAAETPPGALRIGLAHGSVQAFGSDPDTNLLAPDRAR
CEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCCCCHHH
RAGLAYLALGDWHGRLRIDERTHYSGTPEPDDFGREATGLALLVELAGPGAPPQVTDLAI
HCCEEEEEEECCCCEEEEECCCCCCCCCCCHHCCCCHHHHEEEEEECCCCCCCCHHHEEC
GRHHWIEADWNLAAASDLDALTARLALGIARQDVVARLHVSGLLSLGDKVAVRRRLEDGL
CCCEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AHELRWLDLDLGGLVTRPTDTDLAEIDAFGDLRAAAERLNAMAAEGGAEGRLAAAALERL
HHHEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YVEHHRAQRPGEA
HHHHHHCCCCCCC
>Mature Secondary Structure
MRFIHTSDWQLGKPFGRAPEEARAALQEARLGAIDALARAAQAHDAPLVLVAGDVFDSAE
CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
PGDRVYRQALSRMRQAANVTFVLLPGNHDPLRADGLWTRLKAETPPNVIAAIAAEPIALG
CHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCHHCC
EAAVLLPAPLTHKRSLSDPTAWFDAAETPPGALRIGLAHGSVQAFGSDPDTNLLAPDRAR
CEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCEEECCCCCCCCCCCCCHHH
RAGLAYLALGDWHGRLRIDERTHYSGTPEPDDFGREATGLALLVELAGPGAPPQVTDLAI
HCCEEEEEEECCCCEEEEECCCCCCCCCCCHHCCCCHHHHEEEEEECCCCCCCCHHHEEC
GRHHWIEADWNLAAASDLDALTARLALGIARQDVVARLHVSGLLSLGDKVAVRRRLEDGL
CCCEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AHELRWLDLDLGGLVTRPTDTDLAEIDAFGDLRAAAERLNAMAAEGGAEGRLAAAALERL
HHHEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
YVEHHRAQRPGEA
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA