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The map label for this gene is hupD [H]

Identifier: 154246119

GI number: 154246119

Start: 2437768

End: 2438394

Strand: Direct

Name: hupD [H]

Synonym: Xaut_2176

Alternate gene names: 154246119

Gene position: 2437768-2438394 (Clockwise)

Preceding gene: 154246118

Following gene: 154246120

Centisome position: 45.92

GC content: 69.54

Gene sequence:

>627_bases
ATGGACGACGATCGGCAAGTTGCGCGCATTCTGGTGCTCGGCATCGGCAACATCTTGTGGGCTGACGAGGGCTTCGGCGT
CCGCGTGCTGGAAGCGCTCGACGCTTCCCATGTCTTTCCCGACACCGTCACCCTGCTCGATGGCGGCACCCAGGGCCTCT
ATCTGCTCCCCTATCTGGAAGAGGCGGACGGCGTCGTCATCGTGGATGCGGTGGATTACGGCCTCGTTCCGGGCACGCTC
CATATCCTCGCCGATGGTGAGGTGCCCGCCGTGCTCGCCGCCCGCAAGGTGAGCCTGCACCAGACCGGCTTCCAGGAAAT
CCTCGGCCTGCTCGCTTTGCGCGGCAAGACGCCCGCGCGCATCGTGCTGGTGGGCGTGCAGCCCGAGCTGCTGGACGATT
ACGGGGGCGGCCTCACCGCCACCATCGCCGCGCAGGTGGAGCCGGCGGCGCGCAAGGTGCTCGACATCCTGAAGGACGAG
TTCGGCGTGATGCCCGCGCCCCGCGCGGGAGAGGGCAGCCTCGTCACCGCCGCCGTCGGCCGGCAGTCCTACGAAAGCGA
GCGCCCGAGCGCGGAGGCGGCGTGCCGCATCGGCGATCCCCGCGTCCTCGCCACCTCCCGGAGCTGA

Upstream 100 bases:

>100_bases
CCGGAATTGCGAACGGCTGGCATGCTCCTTGAATTGGAGGAACTCGAAAATCAGGCGGCGGTAGACCGCCGTGGGAGGCT
AGCCAGGAGGGATGCGTCGC

Downstream 100 bases:

>100_bases
ACCATGTGCCTCGGCCTGCCCATGCGCATCGAGGAGGTGGAGGGCAGCTTCGCCCTGTGCCGCGCCGAGGGCGCCCGCGA
GCGGGTGGATCTTGCCCTGG

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MDDDRQVARILVLGIGNILWADEGFGVRVLEALDASHVFPDTVTLLDGGTQGLYLLPYLEEADGVVIVDAVDYGLVPGTL
HILADGEVPAVLAARKVSLHQTGFQEILGLLALRGKTPARIVLVGVQPELLDDYGGGLTATIAAQVEPAARKVLDILKDE
FGVMPAPRAGEGSLVTAAVGRQSYESERPSAEAACRIGDPRVLATSRS

Sequences:

>Translated_208_residues
MDDDRQVARILVLGIGNILWADEGFGVRVLEALDASHVFPDTVTLLDGGTQGLYLLPYLEEADGVVIVDAVDYGLVPGTL
HILADGEVPAVLAARKVSLHQTGFQEILGLLALRGKTPARIVLVGVQPELLDDYGGGLTATIAAQVEPAARKVLDILKDE
FGVMPAPRAGEGSLVTAAVGRQSYESERPSAEAACRIGDPRVLATSRS
>Mature_208_residues
MDDDRQVARILVLGIGNILWADEGFGVRVLEALDASHVFPDTVTLLDGGTQGLYLLPYLEEADGVVIVDAVDYGLVPGTL
HILADGEVPAVLAARKVSLHQTGFQEILGLLALRGKTPARIVLVGVQPELLDDYGGGLTATIAAQVEPAARKVLDILKDE
FGVMPAPRAGEGSLVTAAVGRQSYESERPSAEAACRIGDPRVLATSRS

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1787209, Length=180, Percent_Identity=47.7777777777778, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789367, Length=161, Percent_Identity=47.8260869565217, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 21905; Mature: 21905

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDDRQVARILVLGIGNILWADEGFGVRVLEALDASHVFPDTVTLLDGGTQGLYLLPYLE
CCCHHHHHHHHHEECCCEEEECCCCCCHHEEHHCCCCCCCCEEEEEECCCCCEEEEEEEE
EADGVVIVDAVDYGLVPGTLHILADGEVPAVLAARKVSLHQTGFQEILGLLALRGKTPAR
CCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEE
IVLVGVQPELLDDYGGGLTATIAAQVEPAARKVLDILKDEFGVMPAPRAGEGSLVTAAVG
EEEEECCHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
RQSYESERPSAEAACRIGDPRVLATSRS
CHHHCCCCCCCHHEEECCCCEEEEECCC
>Mature Secondary Structure
MDDDRQVARILVLGIGNILWADEGFGVRVLEALDASHVFPDTVTLLDGGTQGLYLLPYLE
CCCHHHHHHHHHEECCCEEEECCCCCCHHEEHHCCCCCCCCEEEEEECCCCCEEEEEEEE
EADGVVIVDAVDYGLVPGTLHILADGEVPAVLAARKVSLHQTGFQEILGLLALRGKTPAR
CCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEE
IVLVGVQPELLDDYGGGLTATIAAQVEPAARKVLDILKDEFGVMPAPRAGEGSLVTAAVG
EEEEECCHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
RQSYESERPSAEAACRIGDPRVLATSRS
CHHHCCCCCCCHHEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ni [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]