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The map label for this gene is yhgF [H]

Identifier: 154246109

GI number: 154246109

Start: 2424975

End: 2427317

Strand: Reverse

Name: yhgF [H]

Synonym: Xaut_2166

Alternate gene names: 154246109

Gene position: 2427317-2424975 (Counterclockwise)

Preceding gene: 154246110

Following gene: 154246107

Centisome position: 45.72

GC content: 70.12

Gene sequence:

>2343_bases
ATGGCTGCCGCCGCACCGCAGGGAATGAGCGAGACCATCGCCCGCATCATCGCCGCCGAGATCAGCGCCCGGCCGGCGCA
GGTCAGCGCGGCCGTGTCCCTCATCGACGAAGGCGCCACGGTTCCCTTCATCGCCCGCTACCGCAAGGAGGTCACGGGCG
GCCTCGACGACACCCAGCTGCGCACCCTGGAAGAACGCCTGTCCTACCTGCGCGAGCTGGAGGCGCGGCGCGCCGCCGTG
CTGTCCTCCATCGACGGGCAGGGCAAGCTTTCCGACGAATTGCGCGGCAAGATCGACGCCGCCACCACCAAGGCGGAGCT
GGAGGACCTCTACCTCCCCTACAAGCCTAAGCGACGCACCAAGGCGGAGATCGCCCGCGAGAAGGGGCTGGGGCCGCTGG
CCGAGGCCCTCCTCGCCGACCGGTCCGTCGCCCCCGCCGAGCGCGCGGCGGCGTACCTCAACGAGCAGGTGGTAGACATC
AAGGCGGCGCTGGACGGCGCCCGCGACATCCTGGTGGAGACTTTCGCGGAGAATGCGGAACTGGTGGGCCGCCTGCGCGC
GCATCTGAAGGCCAATGCCGTGCTTAAGGCCAGGGTGGCCGAGGGCAAGGAGGAGGCGGGCGCCAAGTTCCGTGACTATT
TCGACCATTCGGAAAAATGGGCCACCGCCCCCAGCCACCGCGTGCTCGCCATGCTGCGCGGCCGCAACGAAGAGACGCTG
ACGCTGGACCTGGTGGTGGACGAGGACGCCACCACCCCGGTGAAGCCCGCCGAGCGCATCGTGGCGGAAGCCTTCGCCAT
TCCTCTGGCCAACGGCGCGCCCGCCGATGGCTTCCTGCTGGAGGTGGCCCGCTGGGCATGGCGGGTGAAGCTCTCGCTCC
ACCTCACCGTGGAACTGATGGGCGAGATGCGCGAGCGGGCGGAGGAAGAAGCCATCCGCGTGTTCGCCCGCAACCTCAAG
GACCTGCTGCTGGCCGCCCCCGCCGGATCGCGCGCCACCATGGGGCTCGACCCCGGCATCCGCACCGGCGTGAAGGTGGC
GGTGGTGGACGGCACCGGCAAGCTCATTGCCACCTCTACCGTCTATCCCTTCCAGCCGCGCAACGACGTGCAGGGGGCGA
GCGCCACGCTGGCCCATCTCATCCGGCAGCACAAGGTGGAGCTGATCGCCATCGGCAACGGCACCGCGAGCCGCGAGACC
GACAAGCTGGTGGCGGATCTCCTTGGCATGCTGCCGCCACCCCACCCCATCAAGGTGGTGGTGAGCGAGGCCGGCGCCTC
GGTCTATTCCGCCTCCGCCACCGCCGCGGCCGAAATGCCGGACATCGACGTGTCGATCCGCGGCGCCGTCTCCATCGCCC
GCCGCCTGCAGGACCCGCTGGCGGAGTTGGTGAAGATCGAGCCCAAGGCCATCGGGGTGGGCCAATACCAGCACGACGTG
GATCAGGCCCGCCTCGCCAAGGCCCTCGACGCGGTGGTGGAGGATGCGGTGAACGCCGTGGGCGTGGATCTCAACACCGC
CTCCGCCTCGCTGCTGGCGCGGGTGTCGGGCCTCGGCGCCTCGCTGGCGGAGGCCATCGTGGCCCATCGCAATACGGTGG
GGCCGTTCAAGACCCGCAAGGAGTTGCTGAAGGTTGCGCGCCTCGGGCCAAGGACGTTCGAGCTGTCCGCGGGCTTCCTG
CGCATCGCCGAGGGGACCGAGCCGCTGGATGCCTCCGCCGTGCATCCGGAAGCCTATGACCTCGCCAAGAAGATCGTCGC
CGCCTGTGGGCGAGACGTGCGCGCCCTCATGGGCGACACGGCGGCGCTGAAGGCGCTGGACCCGCGTGCCTTCGTGGACG
AGCGCTTCGGCCTGCCCACGGTGCGCGACATTCTCAGCGAGCTGGAGAAACCCGGCCGCGACCCTCGCCCGCAGTTCAAG
ACCGCCACCTTCGCCGAGGGGGTCAACGAGATGAGCGACCTCAAGCCCGGCATGGTTCTGGAAGGCACGGTGACCAATGT
GGCCGCCTTTGGCGCCTTCGTGGACATCGGCGTGCACCAGGACGGGCTGGTCCACGTCTCGGCGCTGGCCGACCGGTTCG
TGAAGGACCCCCACGAGGTGGTGAAGGCCGGCGACGTGGTGAAGGTGCGGGTGGTGGAAGTGGATGTGAAGCGCAAGCGC
ATCGCCCTCTCCATGCGCAAGGACGATGCGGGCGGGCGGCCCCCCGCCGGCCGTCCCCAGGACCAGCGCCCGAATGAGCC
GCGCCAGAACGACGCCCGCCGGAGCCCACCGCCGAAGGACAAGCCCGCCCAGGGCGCGTTCGGCGCTGCCCTCGCCGACG
CCCTGCGGCGCAAGGGCCAGTAG

Upstream 100 bases:

>100_bases
GAGACGCTTTTCCACCGCGGACGGCGGGGCCTGGTTACCGCATCGTGACAGCGTCCCGTTGGTCCGGTATGGGGCGTGCC
CCGATTCCGAAGGAGAGCCC

Downstream 100 bases:

>100_bases
GTCCGCAAACGAAAAGGCCGGGCAATGCCCGGCCTTTCAACGACCTGACGGTTCACTGCCGCCTCAGCGGCCCGCATGCA
CCCGCGCCAGCCGCGGCACC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 780; Mature: 779

Protein sequence:

>780_residues
MAAAAPQGMSETIARIIAAEISARPAQVSAAVSLIDEGATVPFIARYRKEVTGGLDDTQLRTLEERLSYLRELEARRAAV
LSSIDGQGKLSDELRGKIDAATTKAELEDLYLPYKPKRRTKAEIAREKGLGPLAEALLADRSVAPAERAAAYLNEQVVDI
KAALDGARDILVETFAENAELVGRLRAHLKANAVLKARVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEETL
TLDLVVDEDATTPVKPAERIVAEAFAIPLANGAPADGFLLEVARWAWRVKLSLHLTVELMGEMRERAEEEAIRVFARNLK
DLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATSTVYPFQPRNDVQGASATLAHLIRQHKVELIAIGNGTASRET
DKLVADLLGMLPPPHPIKVVVSEAGASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDV
DQARLAKALDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNTVGPFKTRKELLKVARLGPRTFELSAGFL
RIAEGTEPLDASAVHPEAYDLAKKIVAACGRDVRALMGDTAALKALDPRAFVDERFGLPTVRDILSELEKPGRDPRPQFK
TATFAEGVNEMSDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKR
IALSMRKDDAGGRPPAGRPQDQRPNEPRQNDARRSPPPKDKPAQGAFGAALADALRRKGQ

Sequences:

>Translated_780_residues
MAAAAPQGMSETIARIIAAEISARPAQVSAAVSLIDEGATVPFIARYRKEVTGGLDDTQLRTLEERLSYLRELEARRAAV
LSSIDGQGKLSDELRGKIDAATTKAELEDLYLPYKPKRRTKAEIAREKGLGPLAEALLADRSVAPAERAAAYLNEQVVDI
KAALDGARDILVETFAENAELVGRLRAHLKANAVLKARVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEETL
TLDLVVDEDATTPVKPAERIVAEAFAIPLANGAPADGFLLEVARWAWRVKLSLHLTVELMGEMRERAEEEAIRVFARNLK
DLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATSTVYPFQPRNDVQGASATLAHLIRQHKVELIAIGNGTASRET
DKLVADLLGMLPPPHPIKVVVSEAGASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDV
DQARLAKALDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNTVGPFKTRKELLKVARLGPRTFELSAGFL
RIAEGTEPLDASAVHPEAYDLAKKIVAACGRDVRALMGDTAALKALDPRAFVDERFGLPTVRDILSELEKPGRDPRPQFK
TATFAEGVNEMSDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKR
IALSMRKDDAGGRPPAGRPQDQRPNEPRQNDARRSPPPKDKPAQGAFGAALADALRRKGQ
>Mature_779_residues
AAAAPQGMSETIARIIAAEISARPAQVSAAVSLIDEGATVPFIARYRKEVTGGLDDTQLRTLEERLSYLRELEARRAAVL
SSIDGQGKLSDELRGKIDAATTKAELEDLYLPYKPKRRTKAEIAREKGLGPLAEALLADRSVAPAERAAAYLNEQVVDIK
AALDGARDILVETFAENAELVGRLRAHLKANAVLKARVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEETLT
LDLVVDEDATTPVKPAERIVAEAFAIPLANGAPADGFLLEVARWAWRVKLSLHLTVELMGEMRERAEEEAIRVFARNLKD
LLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATSTVYPFQPRNDVQGASATLAHLIRQHKVELIAIGNGTASRETD
KLVADLLGMLPPPHPIKVVVSEAGASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVD
QARLAKALDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNTVGPFKTRKELLKVARLGPRTFELSAGFLR
IAEGTEPLDASAVHPEAYDLAKKIVAACGRDVRALMGDTAALKALDPRAFVDERFGLPTVRDILSELEKPGRDPRPQFKT
ATFAEGVNEMSDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKRI
ALSMRKDDAGGRPPAGRPQDQRPNEPRQNDARRSPPPKDKPAQGAFGAALADALRRKGQ

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=805, Percent_Identity=31.9254658385093, Blast_Score=346, Evalue=4e-95,
Organism=Homo sapiens, GI27597090, Length=408, Percent_Identity=26.7156862745098, Blast_Score=102, Evalue=1e-21,
Organism=Escherichia coli, GI87082262, Length=756, Percent_Identity=61.7724867724868, Blast_Score=899, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=38.961038961039, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=712, Percent_Identity=28.6516853932584, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17552892, Length=286, Percent_Identity=33.2167832167832, Blast_Score=102, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6321552, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6320850, Length=128, Percent_Identity=35.15625, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62484314, Length=767, Percent_Identity=30.8996088657106, Blast_Score=353, Evalue=3e-97,
Organism=Drosophila melanogaster, GI24640080, Length=464, Percent_Identity=22.8448275862069, Blast_Score=98, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83618; Mature: 83486

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAAPQGMSETIARIIAAEISARPAQVSAAVSLIDEGATVPFIARYRKEVTGGLDDTQL
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH
RTLEERLSYLRELEARRAAVLSSIDGQGKLSDELRGKIDAATTKAELEDLYLPYKPKRRT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCHH
KAEIAREKGLGPLAEALLADRSVAPAERAAAYLNEQVVDIKAALDGARDILVETFAENAE
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVGRLRAHLKANAVLKARVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEETL
HHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCCHHHCCCCCHHHHHHHHCCCCCEE
TLDLVVDEDATTPVKPAERIVAEAFAIPLANGAPADGFLLEVARWAWRVKLSLHLTVELM
EEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEEHHHHH
GEMRERAEEEAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATST
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECE
VYPFQPRNDVQGASATLAHLIRQHKVELIAIGNGTASRETDKLVADLLGMLPPPHPIKVV
ECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEE
VSEAGASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDV
EECCCCHHEECCCHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
DQARLAKALDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNTVGPFKTRK
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHH
ELLKVARLGPRTFELSAGFLRIAEGTEPLDASAVHPEAYDLAKKIVAACGRDVRALMGDT
HHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCH
AALKALDPRAFVDERFGLPTVRDILSELEKPGRDPRPQFKTATFAEGVNEMSDLKPGMVL
HHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
EGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKR
ECHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCHHHHHHCCCEEEEEEEEEEHHHHH
IALSMRKDDAGGRPPAGRPQDQRPNEPRQNDARRSPPPKDKPAQGAFGAALADALRRKGQ
HEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAAAPQGMSETIARIIAAEISARPAQVSAAVSLIDEGATVPFIARYRKEVTGGLDDTQL
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH
RTLEERLSYLRELEARRAAVLSSIDGQGKLSDELRGKIDAATTKAELEDLYLPYKPKRRT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCHH
KAEIAREKGLGPLAEALLADRSVAPAERAAAYLNEQVVDIKAALDGARDILVETFAENAE
HHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVGRLRAHLKANAVLKARVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEETL
HHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHCCCHHHCCCCCHHHHHHHHCCCCCEE
TLDLVVDEDATTPVKPAERIVAEAFAIPLANGAPADGFLLEVARWAWRVKLSLHLTVELM
EEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEEEEEHHHHH
GEMRERAEEEAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATST
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECE
VYPFQPRNDVQGASATLAHLIRQHKVELIAIGNGTASRETDKLVADLLGMLPPPHPIKVV
ECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEE
VSEAGASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDV
EECCCCHHEECCCHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
DQARLAKALDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNTVGPFKTRK
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHH
ELLKVARLGPRTFELSAGFLRIAEGTEPLDASAVHPEAYDLAKKIVAACGRDVRALMGDT
HHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCH
AALKALDPRAFVDERFGLPTVRDILSELEKPGRDPRPQFKTATFAEGVNEMSDLKPGMVL
HHHHHCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
EGTVTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKR
ECHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCHHHHHHCCCEEEEEEEEEEHHHHH
IALSMRKDDAGGRPPAGRPQDQRPNEPRQNDARRSPPPKDKPAQGAFGAALADALRRKGQ
HEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]