| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is speE2 [H]
Identifier: 154246062
GI number: 154246062
Start: 2376609
End: 2379320
Strand: Reverse
Name: speE2 [H]
Synonym: Xaut_2119
Alternate gene names: 154246062
Gene position: 2379320-2376609 (Counterclockwise)
Preceding gene: 154246063
Following gene: 154246061
Centisome position: 44.82
GC content: 72.82
Gene sequence:
>2712_bases ATGTCCCAGTTCCCCGTGTCCGATACCCGCCCGGCCTCGACCGCGACGATGACTGCTTCGTCGCCTGTTGCCATTTCGCC CGAGGTCACCGGTGCCGGCGCCAGCGGCCGCCGCATCGGCGCCATCACCGCCGTGGCCGCGCTGTCGGGCCTCGCCGGGC TCGGATATGAGATCGTCTGGGCGCGGATGCTCGCCGTTGCGCTGGGCCATGAGATCGTGGCGGTGCTGGGCGTGGTCTCC GCGCTGTTCGCGGGCCTTGCCCTCGGCAGCCTGCTCCTCGGCCGCCGCATCGCGTCGAGCCGCTCGCCTGCCACCTGGTA CGCCGGGCTGGAATGCGTCATCGGCCTATGGGCGCTTGCCCTCATCCTCCTGTCGCCGCTGGCCGCCGAGCAGGTGCCGG CTCTGGTGCCGGTGGATGCGGACCCGCTGCGCCAATGGACCGTGGCCTTCGGCCTGCCCTTCGTGCTGCTGCTGCCCGCG ACGCTCGCCATGGGCGCCACCGTTCCGGCGCTGGAAGCCGTGCTCGCGCCGCTGCTGGTGGCGCGCGGGGCGGTGGGGCG GATCTATGCGGCCAATACGGCGGGCGCCGTGGCCGGCACCCTTGCCACCGCCTTCCTGCTCATTCCGGCGCTCGGCCTGT CAGCGACGCTGATGGCCTGCGCCGGGCTGAATTTCGCCTGCGCCGCCCTGCTCATCGCCTTCGCGGGCGGACGAGGCGCG GCGCTGGTGGCGTCCCCGGCGTCTCTTCGCGTGGACACGGAGCGCGCGCACGCCCCCCTCATGGCCTTGTTCGTCACCGG CCTGCTCGGCATCGGCTACGAAGTGGTGACGGTGCGGGTGCTGAGCCAGATCCTCGAAAACACCATCTACACCTTTGCCA TCCTGCTCGCCGCCTACCTCACCGGAACGGCCCTCGGCGCCGTGGCGCGCAATGCCATCGCCGCGCGGCGTCCCGGCGCG GACCTCACCCGGCCGCTGGTGGTGGCAACCGCCCTTGCCTGCCTCCTCGGTGCGGCGCTGCTCGGGGTGTCGGACCGGAT GCTGGAGATGCTGCGGGCGGGGCTTCCCGCCACGCTCGAAGGCCGGCTTGCCGCCGAGCTGGGCATCGCCGCGCTGGCCT TCCTGCCCCCCACCATCGCCATGGGCGCCCTGTTCACGGAGCTGGCCCAGCGCGCAAGCGACAAGGCCGGCGGCGTGGGT CCCGCGCTCGCCGTCAACACGCTGGGGGCGGCGCTGGCGCCGATCCTGTTCGGCCCGCTGCTGCTGCCGCTGCTCGGCGC CAAGCTCGCCTTCGTCGTCATCGCCGTCGGTTATCTCCTTGTGCTGCCGGATCTGGCGCGCAGGTCCCTCATGGCGGCCG GACTCGTCGGCGCGGCCACGGCGGCACTGATGGTGGCGCCCCTGTCCCTGCGCTTCGTGCGCATCCCGCCCGGCGGCGAG CTGGTGTGGCACCGCGACGGAGTGATGGCCGCGGTCAGCGTCATCTCCAACAGCGCCGGCGACCTGCACCTGCAGGTGAA CAACCATTTCCGCATGGGCGGCAGCGCCTCCATGCGCTCCGACCACCGGCAGGCGCACATTCCGCTGCTGCTGCATCCGG CGCCCGAAAGCGCCCTGTTCCTGGGCCTCGGCACCGGCGCGACCCTGTCGGCGGCGGGCGCCCATCCCGGCCTCCGGGCG GACGGGGTGGAACTGGTGCCGGAGGTGGTGGAAACCTTCCCCCTGTTCGGCGCCTCGGCCGGCGAGATTGGCCGCAACCC GCGCCTGCGCGTCCATGTGGCGGACGCGCGGCGCTTCGTACGCGCTCCCGGCGGCCGCTATGACGTGATCGTGGCCGACC TCTATCATCCGTCCGTGGACGGCTCCGGCGCGCTCTATGCTCAAGAGCATTTCGCCGCCATCCGCGACCGGCTGGCGGAG GGCGGGCTGTTCGCCCAATGGCTACCCCTGCACCAGCTGGACCTGCCCACGTTGCGCATCATCGTGCGCACCTTCCTCGA CACGTTCCCGGATGCCAGCGCCTATCTTGCCCAGTTCAGCGTGGAGACGCCCCTGATCGCACTCATCGGCCGGCGCGAGG CGAAGACCTATCCCGCCGATTGGGCCGCGCGGCGCATCACCGATCCGGACCTCGCCGGGCGGCTTGCCGCGCTGGACATG AGCGGCGACTTCTCGCTGTTCGGCCTCTATCTCGCCGGCCGGCCGGAGCTTTCCGCCTTCGCCGGGCCCGGGCCGGTGAA CACGGACGACCGCCCCCTCGTCACCACCGACGCTCCCCGCATCGCCTATGCCGGCACGGACACCCCCGCCGACCGGCTGG TGGCCCTCCTCGCCGCGCTCCACCCCGCGTCCGAGGCGGTGCTGGATGGGTCGGATCCGCAGGCCCGCGCCCGCCTTGCC GCCTACTGGCGCGCGCGCAATGCCTATCTGGAAACCGGGGCGCAGACGCTGGCCGCGCGCGGTCCGCGCGACGTGATCGG GACGCTGGCCCCGCGCCTCATCGAGATCGTGCGCATGAGCCCGGATTTCGAGCCGGCCTATGGGCCGGTGCTGGCCATGG CGCGGCAGCGCGCGGTCAGCGAGCCGGCTGCGGCGCGCCGCCTCCTAGAAGCACTCGATAGGGCGAACCCGGCCCGACCC GATGCACGCCGCCTTCTTGCGGCGCTGCCGCCGGATGCGGGGTCGGCGTCTCGCCCGCCGCCGCCACGGTGA
Upstream 100 bases:
>100_bases GCGCGCTTCGGCCCGCCGGTCCGGACCCGATCTTGGGACCGCGTAACGCCGGGGGCCTTCACGGCCCCCGGCTCGCTTTT TTCCACAGTCCAGGTTCTCC
Downstream 100 bases:
>100_bases AGGGGATGGAGCCGCCGTCAGCGTGATAATGGCGGCGGAAATAGCCGTTCCAGATCACCATGTATTTGCCCGGCGGCAGG GGCTGGGTGACGCGGAACGC
Product: spermine synthase
Products: NA
Alternate protein names: Putrescine aminopropyltransferase 2; PAPT 2; SPDSY 2 [H]
Number of amino acids: Translated: 903; Mature: 902
Protein sequence:
>903_residues MSQFPVSDTRPASTATMTASSPVAISPEVTGAGASGRRIGAITAVAALSGLAGLGYEIVWARMLAVALGHEIVAVLGVVS ALFAGLALGSLLLGRRIASSRSPATWYAGLECVIGLWALALILLSPLAAEQVPALVPVDADPLRQWTVAFGLPFVLLLPA TLAMGATVPALEAVLAPLLVARGAVGRIYAANTAGAVAGTLATAFLLIPALGLSATLMACAGLNFACAALLIAFAGGRGA ALVASPASLRVDTERAHAPLMALFVTGLLGIGYEVVTVRVLSQILENTIYTFAILLAAYLTGTALGAVARNAIAARRPGA DLTRPLVVATALACLLGAALLGVSDRMLEMLRAGLPATLEGRLAAELGIAALAFLPPTIAMGALFTELAQRASDKAGGVG PALAVNTLGAALAPILFGPLLLPLLGAKLAFVVIAVGYLLVLPDLARRSLMAAGLVGAATAALMVAPLSLRFVRIPPGGE LVWHRDGVMAAVSVISNSAGDLHLQVNNHFRMGGSASMRSDHRQAHIPLLLHPAPESALFLGLGTGATLSAAGAHPGLRA DGVELVPEVVETFPLFGASAGEIGRNPRLRVHVADARRFVRAPGGRYDVIVADLYHPSVDGSGALYAQEHFAAIRDRLAE GGLFAQWLPLHQLDLPTLRIIVRTFLDTFPDASAYLAQFSVETPLIALIGRREAKTYPADWAARRITDPDLAGRLAALDM SGDFSLFGLYLAGRPELSAFAGPGPVNTDDRPLVTTDAPRIAYAGTDTPADRLVALLAALHPASEAVLDGSDPQARARLA AYWRARNAYLETGAQTLAARGPRDVIGTLAPRLIEIVRMSPDFEPAYGPVLAMARQRAVSEPAAARRLLEALDRANPARP DARRLLAALPPDAGSASRPPPPR
Sequences:
>Translated_903_residues MSQFPVSDTRPASTATMTASSPVAISPEVTGAGASGRRIGAITAVAALSGLAGLGYEIVWARMLAVALGHEIVAVLGVVS ALFAGLALGSLLLGRRIASSRSPATWYAGLECVIGLWALALILLSPLAAEQVPALVPVDADPLRQWTVAFGLPFVLLLPA TLAMGATVPALEAVLAPLLVARGAVGRIYAANTAGAVAGTLATAFLLIPALGLSATLMACAGLNFACAALLIAFAGGRGA ALVASPASLRVDTERAHAPLMALFVTGLLGIGYEVVTVRVLSQILENTIYTFAILLAAYLTGTALGAVARNAIAARRPGA DLTRPLVVATALACLLGAALLGVSDRMLEMLRAGLPATLEGRLAAELGIAALAFLPPTIAMGALFTELAQRASDKAGGVG PALAVNTLGAALAPILFGPLLLPLLGAKLAFVVIAVGYLLVLPDLARRSLMAAGLVGAATAALMVAPLSLRFVRIPPGGE LVWHRDGVMAAVSVISNSAGDLHLQVNNHFRMGGSASMRSDHRQAHIPLLLHPAPESALFLGLGTGATLSAAGAHPGLRA DGVELVPEVVETFPLFGASAGEIGRNPRLRVHVADARRFVRAPGGRYDVIVADLYHPSVDGSGALYAQEHFAAIRDRLAE GGLFAQWLPLHQLDLPTLRIIVRTFLDTFPDASAYLAQFSVETPLIALIGRREAKTYPADWAARRITDPDLAGRLAALDM SGDFSLFGLYLAGRPELSAFAGPGPVNTDDRPLVTTDAPRIAYAGTDTPADRLVALLAALHPASEAVLDGSDPQARARLA AYWRARNAYLETGAQTLAARGPRDVIGTLAPRLIEIVRMSPDFEPAYGPVLAMARQRAVSEPAAARRLLEALDRANPARP DARRLLAALPPDAGSASRPPPPR >Mature_902_residues SQFPVSDTRPASTATMTASSPVAISPEVTGAGASGRRIGAITAVAALSGLAGLGYEIVWARMLAVALGHEIVAVLGVVSA LFAGLALGSLLLGRRIASSRSPATWYAGLECVIGLWALALILLSPLAAEQVPALVPVDADPLRQWTVAFGLPFVLLLPAT LAMGATVPALEAVLAPLLVARGAVGRIYAANTAGAVAGTLATAFLLIPALGLSATLMACAGLNFACAALLIAFAGGRGAA LVASPASLRVDTERAHAPLMALFVTGLLGIGYEVVTVRVLSQILENTIYTFAILLAAYLTGTALGAVARNAIAARRPGAD LTRPLVVATALACLLGAALLGVSDRMLEMLRAGLPATLEGRLAAELGIAALAFLPPTIAMGALFTELAQRASDKAGGVGP ALAVNTLGAALAPILFGPLLLPLLGAKLAFVVIAVGYLLVLPDLARRSLMAAGLVGAATAALMVAPLSLRFVRIPPGGEL VWHRDGVMAAVSVISNSAGDLHLQVNNHFRMGGSASMRSDHRQAHIPLLLHPAPESALFLGLGTGATLSAAGAHPGLRAD GVELVPEVVETFPLFGASAGEIGRNPRLRVHVADARRFVRAPGGRYDVIVADLYHPSVDGSGALYAQEHFAAIRDRLAEG GLFAQWLPLHQLDLPTLRIIVRTFLDTFPDASAYLAQFSVETPLIALIGRREAKTYPADWAARRITDPDLAGRLAALDMS GDFSLFGLYLAGRPELSAFAGPGPVNTDDRPLVTTDAPRIAYAGTDTPADRLVALLAALHPASEAVLDGSDPQARARLAA YWRARNAYLETGAQTLAARGPRDVIGTLAPRLIEIVRMSPDFEPAYGPVLAMARQRAVSEPAAARRLLEALDRANPARPD ARRLLAALPPDAGSASRPPPPR
Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]
COG id: COG4262
COG function: function code R; Predicted spermidine synthase with an N-terminal membrane domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the spermidine/spermine synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001045 [H]
Pfam domain/function: PF01564 Spermine_synth [H]
EC number: =2.5.1.16 [H]
Molecular weight: Translated: 93435; Mature: 93304
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQFPVSDTRPASTATMTASSPVAISPEVTGAGASGRRIGAITAVAALSGLAGLGYEIVW CCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH ARMLAVALGHEIVAVLGVVSALFAGLALGSLLLGRRIASSRSPATWYAGLECVIGLWALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LILLSPLAAEQVPALVPVDADPLRQWTVAFGLPFVLLLPATLAMGATVPALEAVLAPLLV HHHHCHHHHHHCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH ARGAVGRIYAANTAGAVAGTLATAFLLIPALGLSATLMACAGLNFACAALLIAFAGGRGA HCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC ALVASPASLRVDTERAHAPLMALFVTGLLGIGYEVVTVRVLSQILENTIYTFAILLAAYL EEEECCCCEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGTALGAVARNAIAARRPGADLTRPLVVATALACLLGAALLGVSDRMLEMLRAGLPATLE HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC GRLAAELGIAALAFLPPTIAMGALFTELAQRASDKAGGVGPALAVNTLGAALAPILFGPL CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LLPLLGAKLAFVVIAVGYLLVLPDLARRSLMAAGLVGAATAALMVAPLSLRFVRIPPGGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCC LVWHRDGVMAAVSVISNSAGDLHLQVNNHFRMGGSASMRSDHRQAHIPLLLHPAPESALF EEEECCCHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCEEEECCCCCEEE LGLGTGATLSAAGAHPGLRADGVELVPEVVETFPLFGASAGEIGRNPRLRVHVADARRFV EEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHH RAPGGRYDVIVADLYHPSVDGSGALYAQEHFAAIRDRLAEGGLFAQWLPLHQLDLPTLRI HCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCHHHHH IVRTFLDTFPDASAYLAQFSVETPLIALIGRREAKTYPADWAARRITDPDLAGRLAALDM HHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEC SGDFSLFGLYLAGRPELSAFAGPGPVNTDDRPLVTTDAPRIAYAGTDTPADRLVALLAAL CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHH HPASEAVLDGSDPQARARLAAYWRARNAYLETGAQTLAARGPRDVIGTLAPRLIEIVRMS CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PDFEPAYGPVLAMARQRAVSEPAAARRLLEALDRANPARPDARRLLAALPPDAGSASRPP CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC PPR CCC >Mature Secondary Structure SQFPVSDTRPASTATMTASSPVAISPEVTGAGASGRRIGAITAVAALSGLAGLGYEIVW CCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH ARMLAVALGHEIVAVLGVVSALFAGLALGSLLLGRRIASSRSPATWYAGLECVIGLWALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LILLSPLAAEQVPALVPVDADPLRQWTVAFGLPFVLLLPATLAMGATVPALEAVLAPLLV HHHHCHHHHHHCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH ARGAVGRIYAANTAGAVAGTLATAFLLIPALGLSATLMACAGLNFACAALLIAFAGGRGA HCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC ALVASPASLRVDTERAHAPLMALFVTGLLGIGYEVVTVRVLSQILENTIYTFAILLAAYL EEEECCCCEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGTALGAVARNAIAARRPGADLTRPLVVATALACLLGAALLGVSDRMLEMLRAGLPATLE HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC GRLAAELGIAALAFLPPTIAMGALFTELAQRASDKAGGVGPALAVNTLGAALAPILFGPL CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LLPLLGAKLAFVVIAVGYLLVLPDLARRSLMAAGLVGAATAALMVAPLSLRFVRIPPGGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCC LVWHRDGVMAAVSVISNSAGDLHLQVNNHFRMGGSASMRSDHRQAHIPLLLHPAPESALF EEEECCCHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCEEEECCCCCEEE LGLGTGATLSAAGAHPGLRADGVELVPEVVETFPLFGASAGEIGRNPRLRVHVADARRFV EEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHH RAPGGRYDVIVADLYHPSVDGSGALYAQEHFAAIRDRLAEGGLFAQWLPLHQLDLPTLRI HCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCHHHHH IVRTFLDTFPDASAYLAQFSVETPLIALIGRREAKTYPADWAARRITDPDLAGRLAALDM HHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEC SGDFSLFGLYLAGRPELSAFAGPGPVNTDDRPLVTTDAPRIAYAGTDTPADRLVALLAAL CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHH HPASEAVLDGSDPQARARLAAYWRARNAYLETGAQTLAARGPRDVIGTLAPRLIEIVRMS CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PDFEPAYGPVLAMARQRAVSEPAAARRLLEALDRANPARPDARRLLAALPPDAGSASRPP CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC PPR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]