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The map label for this gene is rbcR [H]

Identifier: 154246033

GI number: 154246033

Start: 2349905

End: 2350861

Strand: Direct

Name: rbcR [H]

Synonym: Xaut_2090

Alternate gene names: 154246033

Gene position: 2349905-2350861 (Clockwise)

Preceding gene: 154246032

Following gene: 154246037

Centisome position: 44.26

GC content: 73.35

Gene sequence:

>957_bases
ATGACGCTGGAGCAGTTGAAGGTCTTCGTCGCCGTGGCCCGCGCCCTGCACATGACGCGCGCGGCCGAGGGCCTCCACAT
GACCCAGTCTGCGGTGAGCGCCTCGGTGGCGGCGCTGGAGGCGTCCTGCGGGGTCGCCCTGTTCCACCGGGTGGGGCGGC
GGATCGAACTGACCGAGGCCGGACACGCCTTCGTGCCCGAAGCCGAGGCGGTACTCGCCCGCGCTGCCGCCGCCGAGACC
GTGCTCGCGGATCTCTCGGGCCTCAGGCGCGGGCGGCTGGCCCTTGAGGCCAGCCAGACCATCGCCAACTACTGGCTCGG
GCCGGTGCTCAACCGCTTCCACACGCTTTATCCCGACATCGCCCTGTCGGTGGTCATCGGCAACACCACGCAGGTGACGG
CGGCGGTGCGGGAGGGCAACGCCGATCTCGGCTTCGTGGAGGGCGAGGTGGAAGAGCCCCTGCTCGCCCGCACCGCGGTG
CCCGGCGACCGGCTGGTGCTGGTGGCGGCGGCGGGCAGTTCCTTCGCCGACCGGCGCGCCATCGCCCCGGCCGATCTGTT
CGAGATGCCGTTCGTGCTGCGCGAGCCGGGCTCGGGCACGCGGCAGGTGTTCGAGGACGCCCTGAAGGCCTCCGGGCTCG
ACCCCGCCGGGCTCAGGGTGGTACTGGAGCTGCCCTCCAACGAGGCGGTGGTGAGCGCGGTGGCGGCAGGGGCGGGCGCG
ACGGTGATCTCGGATCTCGTGGCGGCGGCGGGCCTTGCCACCGGCACCCTGCGCCAGCTGCCCCTGACCTTTCCGGCCCG
CCGCTTCTACGTGCTGCGCCACGCCGATCGCTATCATTCGCGGGCGGCGCAGGCGCTGATGGCGCTGATCCGCGAGCCGG
CGGAAGGCGCGACGATTCCCGCAACCGGAGCCGCTGCGGCGCCCGTCAGCCGCCCGCGGTCTCGAGCTCGGCGCTGA

Upstream 100 bases:

>100_bases
TCGGTCCGGTCGCAGACCGGGCCGTTGGCATATGACAGCCCGCGCGGCGCCCGAGCGAACCAGCCCGCGCGGCGATCGAG
CGAAGCAAGGTGGCGCGTCC

Downstream 100 bases:

>100_bases
CGGCGAGCCATTCTTCTTCCACCTGGGCCAGCTTTTCCACCGCATCGGCACGGGCCTTGGCGAAGCGGGCGGCATCCAGC
GGCTTCTTGGCGTGGAGGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTLEQLKVFVAVARALHMTRAAEGLHMTQSAVSASVAALEASCGVALFHRVGRRIELTEAGHAFVPEAEAVLARAAAAET
VLADLSGLRRGRLALEASQTIANYWLGPVLNRFHTLYPDIALSVVIGNTTQVTAAVREGNADLGFVEGEVEEPLLARTAV
PGDRLVLVAAAGSSFADRRAIAPADLFEMPFVLREPGSGTRQVFEDALKASGLDPAGLRVVLELPSNEAVVSAVAAGAGA
TVISDLVAAAGLATGTLRQLPLTFPARRFYVLRHADRYHSRAAQALMALIREPAEGATIPATGAAAAPVSRPRSRARR

Sequences:

>Translated_318_residues
MTLEQLKVFVAVARALHMTRAAEGLHMTQSAVSASVAALEASCGVALFHRVGRRIELTEAGHAFVPEAEAVLARAAAAET
VLADLSGLRRGRLALEASQTIANYWLGPVLNRFHTLYPDIALSVVIGNTTQVTAAVREGNADLGFVEGEVEEPLLARTAV
PGDRLVLVAAAGSSFADRRAIAPADLFEMPFVLREPGSGTRQVFEDALKASGLDPAGLRVVLELPSNEAVVSAVAAGAGA
TVISDLVAAAGLATGTLRQLPLTFPARRFYVLRHADRYHSRAAQALMALIREPAEGATIPATGAAAAPVSRPRSRARR
>Mature_317_residues
TLEQLKVFVAVARALHMTRAAEGLHMTQSAVSASVAALEASCGVALFHRVGRRIELTEAGHAFVPEAEAVLARAAAAETV
LADLSGLRRGRLALEASQTIANYWLGPVLNRFHTLYPDIALSVVIGNTTQVTAAVREGNADLGFVEGEVEEPLLARTAVP
GDRLVLVAAAGSSFADRRAIAPADLFEMPFVLREPGSGTRQVFEDALKASGLDPAGLRVVLELPSNEAVVSAVAAGAGAT
VISDLVAAAGLATGTLRQLPLTFPARRFYVLRHADRYHSRAAQALMALIREPAEGATIPATGAAAAPVSRPRSRARR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=34.5070422535211, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=28.8659793814433, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=28.4, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788748, Length=298, Percent_Identity=29.1946308724832, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788887, Length=203, Percent_Identity=32.512315270936, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=24.4827586206897, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082132, Length=248, Percent_Identity=29.4354838709677, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786401, Length=144, Percent_Identity=34.0277777777778, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787806, Length=244, Percent_Identity=27.0491803278689, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790399, Length=275, Percent_Identity=24.3636363636364, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=25.0980392156863, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=111, Percent_Identity=40.5405405405405, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788296, Length=250, Percent_Identity=26.8, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789204, Length=255, Percent_Identity=24.7058823529412, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367136, Length=273, Percent_Identity=26.3736263736264, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790262, Length=216, Percent_Identity=25.462962962963, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=130, Percent_Identity=32.3076923076923, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33348; Mature: 33216

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQLKVFVAVARALHMTRAAEGLHMTQSAVSASVAALEASCGVALFHRVGRRIELTEA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
GHAFVPEAEAVLARAAAAETVLADLSGLRRGRLALEASQTIANYWLGPVLNRFHTLYPDI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ALSVVIGNTTQVTAAVREGNADLGFVEGEVEEPLLARTAVPGDRLVLVAAAGSSFADRRA
EEEEEECCCCEEEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCHHHHCC
IAPADLFEMPFVLREPGSGTRQVFEDALKASGLDPAGLRVVLELPSNEAVVSAVAAGAGA
CCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCH
TVISDLVAAAGLATGTLRQLPLTFPARRFYVLRHADRYHSRAAQALMALIREPAEGATIP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ATGAAAAPVSRPRSRARR
CCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
TLEQLKVFVAVARALHMTRAAEGLHMTQSAVSASVAALEASCGVALFHRVGRRIELTEA
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC
GHAFVPEAEAVLARAAAAETVLADLSGLRRGRLALEASQTIANYWLGPVLNRFHTLYPDI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ALSVVIGNTTQVTAAVREGNADLGFVEGEVEEPLLARTAVPGDRLVLVAAAGSSFADRRA
EEEEEECCCCEEEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCHHHHCC
IAPADLFEMPFVLREPGSGTRQVFEDALKASGLDPAGLRVVLELPSNEAVVSAVAAGAGA
CCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCH
TVISDLVAAAGLATGTLRQLPLTFPARRFYVLRHADRYHSRAAQALMALIREPAEGATIP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ATGAAAAPVSRPRSRARR
CCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA