BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is yohF [H]

Identifier: 154245982

GI number: 154245982

Start: 2297737

End: 2298489

Strand: Direct

Name: yohF [H]

Synonym: Xaut_2039

Alternate gene names: 154245982

Gene position: 2297737-2298489 (Clockwise)

Preceding gene: 154245981

Following gene: 154245987

Centisome position: 43.28

GC content: 67.86

Gene sequence:

>753_bases
ATGAGCAAGACGGGGAAGAAGATTGCCATCGTGACCGGGGCGGGCTCCGGCGTCGGGCGGGCGGTGGCGGTGGCGCTGGC
CGGGGCCGGCTATGGCGTGGCCCTGGCCGGCCGGCGCCTCGATGCCCTTCAGGAGACCGCCGCCGAGATCGGCGACGACG
CCCTGTGCGTGCCCACCGACGTGACCGATCCCGATTCGGTCCGCGCCCTGTTCACCGCCACGGTGGAGAAGTTCGGCCGG
GTGGATGTGCTCTTCAACAATGCCGGCACCGGCGCCCCGGCCATTCCCATGGAAGACCTCACCTTCGCCCAGTGGAAGCA
GGTGGTGGACACCAACCTCACCGGCCCGTTCCTGTGCACCCAGGAGGCGTTCCGGGTGATGAAGGCGCAGGAGCCGCGCG
GCGGGCGCATCATCAACAACGGCTCCATCTCGGCCACCTCGCCGCGACCCTATTCGGCGCCCTACACGGCCACCAAGCAC
GCCATCACCGGGCTTACCAAGTCCACCTCGCTGGACGGGCGCGTCCATGACATCGCCTGCGGGCAGATCGACATCGGCAA
TGCCGATACCCCCATGGCGCAGAAGATGAAGGCCGGCGTGCCGCAGGCAGACCTCTCCATCAAGGTGGAGCCGGTGATGG
ACGTGGCTCATGTGGCGAGCGCGGTGGTCTACATGGCGAGCCTGCCCTTGGATGCCAACGTGCAGTTCATGACCATCATG
GCCACCAAGATGCCCCTCATCGGCCGCGGCTGA

Upstream 100 bases:

>100_bases
AAAAAAGCGGCCGGACTGGTTGTCGGGGTCGTTCGAAACGATTTAAAACCCCATCAGTCACGCACGGCAAGACGTGGGAC
AGGATGTGGGAGAAGCGGCC

Downstream 100 bases:

>100_bases
TCTCAACTTTGGCGCGCGCCGGGCCGGCAGGGTGCCGGCCCGGCTGGGTCCTTCTCAGCGGATGAACTGGTCGACGAAGC
CCGCGCCGAGGCCTGCTGCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGR
VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKH
AITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIM
ATKMPLIGRG

Sequences:

>Translated_250_residues
MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGR
VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKH
AITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIM
ATKMPLIGRG
>Mature_249_residues
SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRV
DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHA
ITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIMA
TKMPLIGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=31.1740890688259, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI31542939, Length=171, Percent_Identity=33.9181286549708, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI59889578, Length=181, Percent_Identity=29.8342541436464, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI40254992, Length=224, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=33.5294117647059, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI7706318, Length=165, Percent_Identity=31.5151515151515, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI15277342, Length=237, Percent_Identity=31.6455696202532, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4504505, Length=244, Percent_Identity=29.5081967213115, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI209862901, Length=202, Percent_Identity=28.7128712871287, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI19923983, Length=202, Percent_Identity=28.7128712871287, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI19923817, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI32483357, Length=171, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI83715985, Length=175, Percent_Identity=32.5714285714286, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4758504, Length=175, Percent_Identity=32.5714285714286, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI10190704, Length=242, Percent_Identity=28.5123966942149, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=27.5675675675676, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1788459, Length=227, Percent_Identity=34.3612334801762, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI2367175, Length=172, Percent_Identity=38.3720930232558, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787335, Length=229, Percent_Identity=30.5676855895196, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789057, Length=212, Percent_Identity=32.5471698113208, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI87082160, Length=164, Percent_Identity=35.3658536585366, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787820, Length=239, Percent_Identity=27.1966527196653, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789378, Length=230, Percent_Identity=31.7391304347826, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789208, Length=198, Percent_Identity=31.3131313131313, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790717, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787905, Length=135, Percent_Identity=34.0740740740741, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082100, Length=199, Percent_Identity=31.1557788944724, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786812, Length=242, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=228, Percent_Identity=30.2631578947368, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=175, Percent_Identity=32, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=215, Percent_Identity=29.3023255813954, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=215, Percent_Identity=30.2325581395349, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=176, Percent_Identity=30.1136363636364, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=197, Percent_Identity=30.9644670050761, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=200, Percent_Identity=31.5, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=176, Percent_Identity=31.25, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=224, Percent_Identity=29.9107142857143, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=209, Percent_Identity=29.6650717703349, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=184, Percent_Identity=30.9782608695652, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=167, Percent_Identity=32.9341317365269, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=211, Percent_Identity=29.3838862559242, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=209, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=165, Percent_Identity=32.1212121212121, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=25.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=182, Percent_Identity=34.0659340659341, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=212, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=256, Percent_Identity=29.296875, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=177, Percent_Identity=31.0734463276836, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=202, Percent_Identity=27.7227722772277, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=249, Percent_Identity=25.7028112449799, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=186, Percent_Identity=31.1827956989247, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=186, Percent_Identity=28.494623655914, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=235, Percent_Identity=27.2340425531915, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17536651, Length=242, Percent_Identity=28.099173553719, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=29.3814432989691, Blast_Score=76, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=175, Percent_Identity=28, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=29.2307692307692, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=32.8063241106719, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=35.7541899441341, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24641232, Length=177, Percent_Identity=34.4632768361582, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI17737361, Length=197, Percent_Identity=32.994923857868, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21357041, Length=171, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI281364494, Length=248, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI23397609, Length=236, Percent_Identity=33.0508474576271, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24580925, Length=188, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007234, Length=261, Percent_Identity=29.1187739463602, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007232, Length=180, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI18859837, Length=266, Percent_Identity=29.6992481203008, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=33.5106382978723, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648944, Length=233, Percent_Identity=29.6137339055794, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21355319, Length=175, Percent_Identity=27.4285714285714, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24649181, Length=161, Percent_Identity=34.7826086956522, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24663911, Length=251, Percent_Identity=27.8884462151394, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24644339, Length=236, Percent_Identity=25.8474576271186, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571526, Length=180, Percent_Identity=32.7777777777778, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24641388, Length=252, Percent_Identity=28.1746031746032, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21355631, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571387, Length=259, Percent_Identity=27.4131274131274, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643142, Length=166, Percent_Identity=32.5301204819277, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26004; Mature: 25873

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTD
CCCCCCEEEEEEECCCCHHHEEEEEHHCCCCCEEECCHHHHHHHHHHHHHCCCCEEECCC
VTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCT
CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEH
QEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIAC
HHHHHHHHCCCCCCCEEEECCCEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEE
GQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIM
CEEECCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
ATKMPLIGRG
ECCCCCCCCC
>Mature Secondary Structure 
SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTD
CCCCCEEEEEEECCCCHHHEEEEEHHCCCCCEEECCHHHHHHHHHHHHHCCCCEEECCC
VTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCT
CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEH
QEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIAC
HHHHHHHHCCCCCCCEEEECCCEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEE
GQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIM
CEEECCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
ATKMPLIGRG
ECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]