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The map label for this gene is cbbR [H]

Identifier: 154245863

GI number: 154245863

Start: 2170655

End: 2171611

Strand: Direct

Name: cbbR [H]

Synonym: Xaut_1919

Alternate gene names: 154245863

Gene position: 2170655-2171611 (Clockwise)

Preceding gene: 154245854

Following gene: 154245868

Centisome position: 40.89

GC content: 70.74

Gene sequence:

>957_bases
ATGGCCTCCCACTGGACCCTGAAGCAGCTGCGGCTGGTGGCCCTCGCCGCCGCCTCCGGCTCCTACGCCAAGGCCGCTCA
GGACATGGGTTTAAGCCCGCCAGCGGTGACCGCGCAGATGAAGGCGCTGGAGGAGGACCTCGGGGTGCCGGTGTTCGAGC
GGGTGGACGGCCGGCTGCGACCGACCGCCGCTGGCGCGGAGCTTCTGGCCGCCCAGCACCGAATCGCCCACGCCCTCCAG
GAGGCGGAGCGGGCAATCGCGGCCCTGAAAAGCCCCGATCGCGGATCGGTGGTGGTGGGGGTGGTCTCCACCGCGAAGTA
TTTCGCGCCCATGGCGCTGGCGGCATTCCGCAAGCGCCGCCCCGAGATCGAGTTGAAGCTCATGATCGGCAACCGGGAAG
AGATCATCGCCGGGCTGGTGAGCCTCGATTTCGACGTGGCCATCATGGGCCGTCCCCCGGCGGCGCTGGAGGCGAAGACC
GAGATTCTTGGGGATCACCCCCATGTGGTCATCGCCCCGCCCGAGCACCGTCTCATCGGCCAGCGCATCTCCCCCATGGA
CCTGGCGAAGGAGCCCCTGCTGGTGCGCGAGCCGGGATCGGGCACCCGCATCCTCATGGAGCGGGTGTTCGAGGAGGCGG
GCGTGGCCCAGCCTGCCATCGCCATGGAGATCGGCTCCAACGAGACCATCAAGCAGGCGGTGATGGCGGGGCTGGGCCTG
TCCTTCATCTCCGCCCACACGGTGGCGGCCGAGGTGGCGGACGGGCGCCTGAAGGTGCTGGAGGTGCAGGGCCTGCCGGT
GGTGCGCCAGTGGCTGGTGGTGCGGGCCAAGGAGAAGCGCCTGCTGCCGGCGGGGCGGGCGCTGCTGGATTTCCTCGCCC
GGGAGGGCGGCAGCTTCCTGCCGCAGATGCCGGAAGGCGAGGGTGGCCGCTGCTTCCTGCCGGAGGCGCGCGCCTAG

Upstream 100 bases:

>100_bases
CCCATGATGGCGGCCCTCCTTGCTTGTTGGAGGGACCTTGCCCCATGACCAGATTTAGGTAAATTTGAATGATATGAACT
AAGCATTCAGGAAATCTGAA

Downstream 100 bases:

>100_bases
GGCGTCTCCCGCTTCCAGGGAATCAGGGAGACGCTCCGGATCTTTGGCCTGACGCGTTTTGCAGGCGCGAACCGGTATCC
ACGTCGCCGGGAAGCGCTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MASHWTLKQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDLGVPVFERVDGRLRPTAAGAELLAAQHRIAHALQ
EAERAIAALKSPDRGSVVVGVVSTAKYFAPMALAAFRKRRPEIELKLMIGNREEIIAGLVSLDFDVAIMGRPPAALEAKT
EILGDHPHVVIAPPEHRLIGQRISPMDLAKEPLLVREPGSGTRILMERVFEEAGVAQPAIAMEIGSNETIKQAVMAGLGL
SFISAHTVAAEVADGRLKVLEVQGLPVVRQWLVVRAKEKRLLPAGRALLDFLAREGGSFLPQMPEGEGGRCFLPEARA

Sequences:

>Translated_318_residues
MASHWTLKQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDLGVPVFERVDGRLRPTAAGAELLAAQHRIAHALQ
EAERAIAALKSPDRGSVVVGVVSTAKYFAPMALAAFRKRRPEIELKLMIGNREEIIAGLVSLDFDVAIMGRPPAALEAKT
EILGDHPHVVIAPPEHRLIGQRISPMDLAKEPLLVREPGSGTRILMERVFEEAGVAQPAIAMEIGSNETIKQAVMAGLGL
SFISAHTVAAEVADGRLKVLEVQGLPVVRQWLVVRAKEKRLLPAGRALLDFLAREGGSFLPQMPEGEGGRCFLPEARA
>Mature_317_residues
ASHWTLKQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDLGVPVFERVDGRLRPTAAGAELLAAQHRIAHALQE
AERAIAALKSPDRGSVVVGVVSTAKYFAPMALAAFRKRRPEIELKLMIGNREEIIAGLVSLDFDVAIMGRPPAALEAKTE
ILGDHPHVVIAPPEHRLIGQRISPMDLAKEPLLVREPGSGTRILMERVFEEAGVAQPAIAMEIGSNETIKQAVMAGLGLS
FISAHTVAAEVADGRLKVLEVQGLPVVRQWLVVRAKEKRLLPAGRALLDFLAREGGSFLPQMPEGEGGRCFLPEARA

Specific function: Transcriptional activator for the cbb operon (cbbLSXFP) for RuBisCO and other Calvin cycle genes. Binds specifically to two binding sites in the cbbR-cbbL intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=30.4498269896194, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=26.4214046822742, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=26.3333333333333, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082132, Length=256, Percent_Identity=25.390625, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=254, Percent_Identity=27.5590551181102, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=26.1744966442953, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693105, Length=204, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=213, Percent_Identity=30.5164319248826, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789204, Length=254, Percent_Identity=25.5905511811024, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=26.7489711934156, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=22.9885057471264, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788296, Length=256, Percent_Identity=25.78125, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=268, Percent_Identity=26.1194029850746, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790399, Length=249, Percent_Identity=25.3012048192771, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=26.6129032258064, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34073; Mature: 33942

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASHWTLKQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDLGVPVFERVDGRLR
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCC
PTAAGAELLAAQHRIAHALQEAERAIAALKSPDRGSVVVGVVSTAKYFAPMALAAFRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC
PEIELKLMIGNREEIIAGLVSLDFDVAIMGRPPAALEAKTEILGDHPHVVIAPPEHRLIG
CCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEEECCCCHHHHC
QRISPMDLAKEPLLVREPGSGTRILMERVFEEAGVAQPAIAMEIGSNETIKQAVMAGLGL
CCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCH
SFISAHTVAAEVADGRLKVLEVQGLPVVRQWLVVRAKEKRLLPAGRALLDFLAREGGSFL
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
PQMPEGEGGRCFLPEARA
CCCCCCCCCEEECCCCCC
>Mature Secondary Structure 
ASHWTLKQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDLGVPVFERVDGRLR
CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCC
PTAAGAELLAAQHRIAHALQEAERAIAALKSPDRGSVVVGVVSTAKYFAPMALAAFRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC
PEIELKLMIGNREEIIAGLVSLDFDVAIMGRPPAALEAKTEILGDHPHVVIAPPEHRLIG
CCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEEECCCCHHHHC
QRISPMDLAKEPLLVREPGSGTRILMERVFEEAGVAQPAIAMEIGSNETIKQAVMAGLGL
CCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCH
SFISAHTVAAEVADGRLKVLEVQGLPVVRQWLVVRAKEKRLLPAGRALLDFLAREGGSFL
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
PQMPEGEGGRCFLPEARA
CCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407781; 1900916 [H]