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The map label for this gene is potC [H]

Identifier: 154244809

GI number: 154244809

Start: 957847

End: 958653

Strand: Direct

Name: potC [H]

Synonym: Xaut_0859

Alternate gene names: 154244809

Gene position: 957847-958653 (Clockwise)

Preceding gene: 154244808

Following gene: 154244810

Centisome position: 18.04

GC content: 66.42

Gene sequence:

>807_bases
ATGGGAATTCTCGCCATCAACCGCATCTATGCCGCGCTCTCGGCGCTGGTGCTTGCCTTCGTGCTGCTGCCGCTGGTGGC
CATCGTGTGGGTGAGCTTCTTCGCCAACCGCATCCTCTCCTTCCCGGCCACCGGATACACCCTCGACTGGTATGTCCGCG
CCTGGGAGCAGGAGGCGTTCCGCAACGGCTTCATCACCAGCATCGAGACCGCGCTGGTGGCGGTGGCCATCTCGCTGGTG
CTGGGCGTGCCGGCAAGCCTGGCGCTGGTGCGCTATCGCTTTCCGGGGCGGGATGCCATCCAGACCGTGCTGCTCTCGCC
CATGGTGGTGCCTGGCATCGTCGGCGGCGCGGCCCTGTTCATGGCCTTCATCGAGCTGGAAGTGCTGCTGGACGTGGAGA
TCGCCGGCACCCTGCCGGGCCTGCTCATCGCCCATGGCCTCATCGCCTTGCCGTGGACGGTGAGGTTGGTGACGGCCTCG
CTGGTGGGCATGAGTCCGTCCTTTGAGGAAGCGGCGCGCTCGCTGGGCGCGGGGGTGTTCACCACCTTCTTCCGGGTGAC
GCTGCCCATCATCAAGCCGGGCATCGTGGCGGCGGCGCTGTTCTCCTTCGTGGTGTCCTTCATCGACCTTGAGAAGTCGA
TCTTCCTGGTGGGGCCGGGCCGCACCACGCTCCAGATCGCGCTGGTCTCGTATCTGGAATGGAACCTTGATTCCACGGTG
GCGGCGGTCGCGACCGTGCAGATCCTCATCATCGGCGCGCTGCTGATCGCCAGCGACCGCTATGCCCGCCTCGCGCGGGC
GTTCTGA

Upstream 100 bases:

>100_bases
CGCTCGCCTTCGTGCTCATGGCGGTGACCCTGGTGCTGACCACCACCGCCAACGTCCTGGTGCAGCGGCGCTATCGCCGC
TGGAGCGAGTGAGTGCCGCC

Downstream 100 bases:

>100_bases
AACGCCTGTTTTCGGAGTGACCTGAATGTCCGACGTCGTCCTCCAGTCCATCGTCAAGCGCTATGACGCCACCACCGCCG
TGGACAATGTCTCGCTCAAC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MGILAINRIYAALSALVLAFVLLPLVAIVWVSFFANRILSFPATGYTLDWYVRAWEQEAFRNGFITSIETALVAVAISLV
LGVPASLALVRYRFPGRDAIQTVLLSPMVVPGIVGGAALFMAFIELEVLLDVEIAGTLPGLLIAHGLIALPWTVRLVTAS
LVGMSPSFEEAARSLGAGVFTTFFRVTLPIIKPGIVAAALFSFVVSFIDLEKSIFLVGPGRTTLQIALVSYLEWNLDSTV
AAVATVQILIIGALLIASDRYARLARAF

Sequences:

>Translated_268_residues
MGILAINRIYAALSALVLAFVLLPLVAIVWVSFFANRILSFPATGYTLDWYVRAWEQEAFRNGFITSIETALVAVAISLV
LGVPASLALVRYRFPGRDAIQTVLLSPMVVPGIVGGAALFMAFIELEVLLDVEIAGTLPGLLIAHGLIALPWTVRLVTAS
LVGMSPSFEEAARSLGAGVFTTFFRVTLPIIKPGIVAAALFSFVVSFIDLEKSIFLVGPGRTTLQIALVSYLEWNLDSTV
AAVATVQILIIGALLIASDRYARLARAF
>Mature_267_residues
GILAINRIYAALSALVLAFVLLPLVAIVWVSFFANRILSFPATGYTLDWYVRAWEQEAFRNGFITSIETALVAVAISLVL
GVPASLALVRYRFPGRDAIQTVLLSPMVVPGIVGGAALFMAFIELEVLLDVEIAGTLPGLLIAHGLIALPWTVRLVTASL
VGMSPSFEEAARSLGAGVFTTFFRVTLPIIKPGIVAAALFSFVVSFIDLEKSIFLVGPGRTTLQIALVSYLEWNLDSTVA
AVATVQILIIGALLIASDRYARLARAF

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=219, Percent_Identity=28.7671232876712, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787081, Length=242, Percent_Identity=29.3388429752066, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788764, Length=155, Percent_Identity=32.9032258064516, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787714, Length=222, Percent_Identity=32.4324324324324, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28740; Mature: 28608

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGILAINRIYAALSALVLAFVLLPLVAIVWVSFFANRILSFPATGYTLDWYVRAWEQEAF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
RNGFITSIETALVAVAISLVLGVPASLALVRYRFPGRDAIQTVLLSPMVVPGIVGGAALF
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
MAFIELEVLLDVEIAGTLPGLLIAHGLIALPWTVRLVTASLVGMSPSFEEAARSLGAGVF
HHHHHHHHHEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
TTFFRVTLPIIKPGIVAAALFSFVVSFIDLEKSIFLVGPGRTTLQIALVSYLEWNLDSTV
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCHHH
AAVATVQILIIGALLIASDRYARLARAF
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GILAINRIYAALSALVLAFVLLPLVAIVWVSFFANRILSFPATGYTLDWYVRAWEQEAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
RNGFITSIETALVAVAISLVLGVPASLALVRYRFPGRDAIQTVLLSPMVVPGIVGGAALF
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
MAFIELEVLLDVEIAGTLPGLLIAHGLIALPWTVRLVTASLVGMSPSFEEAARSLGAGVF
HHHHHHHHHEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
TTFFRVTLPIIKPGIVAAALFSFVVSFIDLEKSIFLVGPGRTTLQIALVSYLEWNLDSTV
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCHHH
AAVATVQILIIGALLIASDRYARLARAF
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]