Definition Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession NC_009720
Length 5,308,934

Click here to switch to the map view.

The map label for this gene is czcC [H]

Identifier: 154244570

GI number: 154244570

Start: 690167

End: 691483

Strand: Reverse

Name: czcC [H]

Synonym: Xaut_0617

Alternate gene names: 154244570

Gene position: 691483-690167 (Counterclockwise)

Preceding gene: 154244571

Following gene: 154244569

Centisome position: 13.02

GC content: 70.24

Gene sequence:

>1317_bases
ATGCCGCCTCGTGCCCTTGCGCGTGCGCTTGTGGCAGCCCTTGTGCTGCTTCCGGCGTCGCCGACGCTTGCCGAATCCGC
GCGTCCCCAATCCACACGCCCTGCAGCCGCGCGTTCTTCAGCCGAGCGCCCTCTCGCCTTGACCAGTGCGATGGCGAGCG
CGCTCGCCGCCAATCCCCGCCTCACGGCGGCGGAACGGGACATCGGCATGGCCTCCGGCCGCTCCACCCAGGCCGCCGCA
CTGCCCAATCCGGCCTTGTCGCTGGAGGTAGACAACGCCATGGGCTCTGGCTCCTACCAGGGGCTGGACCTCGCCGAGCA
GACGCTGCAGATCAGCCAGCTGGTGGAGCTGGGCAGCAAGCGCGAGGCGCGCATGGCCGCCGCCGGCGCGGGTGTCACAG
TCGCGCGCTGGGAGCGTGAGGCGACCCGCCTGCAGGTGCTGGCGGAAACCACCGCAGCTTTCTCCGCCGTGCTGGGCGCG
CAGCAGCGCGTCTCCATCCTCGATCAGCAGGCGGCGGCGATTGCGCGCCTTGCGCCGCTGCTGCAGACGCGGGTGGATGC
GGGCGCGTCCTCTCCTGCGGAGATTTCGCGCGCCCGTGTCGCCGCAGATTTCGCGAAAGTCGAGCTGGACCGGGCCAAGG
CGTCTCTCGGGACCGCGCGACGTGACCTGGCCGTGCTCATGGGCATGAACGAGGCCCGGTTCGGCCGCGCCACGGGCAAT
CTTTTCAAAGTCAGCGCGCCGCCAGCGCTGCCGAGCCTCATCAAGCAGGCTCAGGGCAACCCCCAACTCACGCGTTTCAC
GGCCGTCCAAGGGCAGCGGCGGGCCGAGCTGCGCGCCGCGCAGGCGAAAGCGGTGCCCGACGTGACCCTGGGGGTCGGCT
ATCGCCACTACAACGAGACCGCCGACAGCGGCATGCGGGTGACGCTCTCAGTGCCGATCCCGATCTTCGACCGCAATGAA
GGCGGCATTTACGAGGCACAGGAATCCCTGCGCCGGGCGGAGGCGGAGGAGGCCATCGCCCGCGGTGCGCTGATCGCCCA
GTTGGGGCGCGCCCACGACACCCTGAAGGCGGCCTATGACGAGGTCAGCCTGCTGCGCACCAGCACCATTCCCGGCGCGC
GCAGCGCCTTCGAGGGCGTGGAGCGTGGCTACGGCGAGGGCCGCTACACGCTGCTCGAGCTGCTGGACGCCCAGTCCGCG
CTCACCGATGCGTCGCTGCGCGAGCTCGACGCCCTGGTCAATTTCCACACCGCGCTCGCGACCATCGAGGGCCTGATCGG
CCGGCCGGTGAACCTCAGCAAGGGAAAGACGAAATGA

Upstream 100 bases:

>100_bases
CCGTTCCCACCGAAATCCGTCCCCCCTGCGCCTGATCTGACCCCTGTCCGCGCGCGGGCGCCCTGCGCCTGCGTTCAGCT
CACAGCCATCGGATCAGATC

Downstream 100 bases:

>100_bases
GCCGCACGGCGCGACGCGACCTGGCGATGCTCGTGGTCGGCCTTATGGCCGGAGCGGGCGCCATCTATGCTTTTCAGGGG
CCTACGGCACCGGTGCCCGG

Product: outer membrane efflux protein

Products: NA

Alternate protein names: Cation efflux system protein CzcC [H]

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MPPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPRLTAAERDIGMASGRSTQAAA
LPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSKREARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGA
QQRVSILDQQAAAIARLAPLLQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN
LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNETADSGMRVTLSVPIPIFDRNE
GGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYDEVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSA
LTDASLRELDALVNFHTALATIEGLIGRPVNLSKGKTK

Sequences:

>Translated_438_residues
MPPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPRLTAAERDIGMASGRSTQAAA
LPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSKREARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGA
QQRVSILDQQAAAIARLAPLLQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN
LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNETADSGMRVTLSVPIPIFDRNE
GGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYDEVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSA
LTDASLRELDALVNFHTALATIEGLIGRPVNLSKGKTK
>Mature_437_residues
PPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPRLTAAERDIGMASGRSTQAAAL
PNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSKREARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGAQ
QRVSILDQQAAAIARLAPLLQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGNL
FKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNETADSGMRVTLSVPIPIFDRNEG
GIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYDEVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSAL
TDASLRELDALVNFHTALATIEGLIGRPVNLSKGKTK

Specific function: CzcC protein appears to modify the specificity of the system, perhaps by acting on the CzcB protein. When the CzcC protein is added to CzcA and CzcB, the efflux system gains specificity for cadmium and cobalt [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=399, Percent_Identity=22.3057644110276, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 46098; Mature: 45967

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPR
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCC
LTAAERDIGMASGRSTQAAALPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSK
CCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
REARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGAQQRVSILDQQAAAIARLAPL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNET
EEEECCCCHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHCCCCEEEECCHHHHCCC
ADSGMRVTLSVPIPIFDRNEGGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYD
CCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSALTDASLRELDALVNFHTALA
HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIEGLIGRPVNLSKGKTK
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPR
CHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCC
LTAAERDIGMASGRSTQAAALPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSK
CCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
REARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGAQQRVSILDQQAAAIARLAPL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNET
EEEECCCCHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHCCCCEEEECCHHHHCCC
ADSGMRVTLSVPIPIFDRNEGGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYD
CCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSALTDASLRELDALVNFHTALA
HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIEGLIGRPVNLSKGKTK
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2678100; 7766206 [H]