Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
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Accession | NC_009720 |
Length | 5,308,934 |
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The map label for this gene is czcC [H]
Identifier: 154244570
GI number: 154244570
Start: 690167
End: 691483
Strand: Reverse
Name: czcC [H]
Synonym: Xaut_0617
Alternate gene names: 154244570
Gene position: 691483-690167 (Counterclockwise)
Preceding gene: 154244571
Following gene: 154244569
Centisome position: 13.02
GC content: 70.24
Gene sequence:
>1317_bases ATGCCGCCTCGTGCCCTTGCGCGTGCGCTTGTGGCAGCCCTTGTGCTGCTTCCGGCGTCGCCGACGCTTGCCGAATCCGC GCGTCCCCAATCCACACGCCCTGCAGCCGCGCGTTCTTCAGCCGAGCGCCCTCTCGCCTTGACCAGTGCGATGGCGAGCG CGCTCGCCGCCAATCCCCGCCTCACGGCGGCGGAACGGGACATCGGCATGGCCTCCGGCCGCTCCACCCAGGCCGCCGCA CTGCCCAATCCGGCCTTGTCGCTGGAGGTAGACAACGCCATGGGCTCTGGCTCCTACCAGGGGCTGGACCTCGCCGAGCA GACGCTGCAGATCAGCCAGCTGGTGGAGCTGGGCAGCAAGCGCGAGGCGCGCATGGCCGCCGCCGGCGCGGGTGTCACAG TCGCGCGCTGGGAGCGTGAGGCGACCCGCCTGCAGGTGCTGGCGGAAACCACCGCAGCTTTCTCCGCCGTGCTGGGCGCG CAGCAGCGCGTCTCCATCCTCGATCAGCAGGCGGCGGCGATTGCGCGCCTTGCGCCGCTGCTGCAGACGCGGGTGGATGC GGGCGCGTCCTCTCCTGCGGAGATTTCGCGCGCCCGTGTCGCCGCAGATTTCGCGAAAGTCGAGCTGGACCGGGCCAAGG CGTCTCTCGGGACCGCGCGACGTGACCTGGCCGTGCTCATGGGCATGAACGAGGCCCGGTTCGGCCGCGCCACGGGCAAT CTTTTCAAAGTCAGCGCGCCGCCAGCGCTGCCGAGCCTCATCAAGCAGGCTCAGGGCAACCCCCAACTCACGCGTTTCAC GGCCGTCCAAGGGCAGCGGCGGGCCGAGCTGCGCGCCGCGCAGGCGAAAGCGGTGCCCGACGTGACCCTGGGGGTCGGCT ATCGCCACTACAACGAGACCGCCGACAGCGGCATGCGGGTGACGCTCTCAGTGCCGATCCCGATCTTCGACCGCAATGAA GGCGGCATTTACGAGGCACAGGAATCCCTGCGCCGGGCGGAGGCGGAGGAGGCCATCGCCCGCGGTGCGCTGATCGCCCA GTTGGGGCGCGCCCACGACACCCTGAAGGCGGCCTATGACGAGGTCAGCCTGCTGCGCACCAGCACCATTCCCGGCGCGC GCAGCGCCTTCGAGGGCGTGGAGCGTGGCTACGGCGAGGGCCGCTACACGCTGCTCGAGCTGCTGGACGCCCAGTCCGCG CTCACCGATGCGTCGCTGCGCGAGCTCGACGCCCTGGTCAATTTCCACACCGCGCTCGCGACCATCGAGGGCCTGATCGG CCGGCCGGTGAACCTCAGCAAGGGAAAGACGAAATGA
Upstream 100 bases:
>100_bases CCGTTCCCACCGAAATCCGTCCCCCCTGCGCCTGATCTGACCCCTGTCCGCGCGCGGGCGCCCTGCGCCTGCGTTCAGCT CACAGCCATCGGATCAGATC
Downstream 100 bases:
>100_bases GCCGCACGGCGCGACGCGACCTGGCGATGCTCGTGGTCGGCCTTATGGCCGGAGCGGGCGCCATCTATGCTTTTCAGGGG CCTACGGCACCGGTGCCCGG
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Cation efflux system protein CzcC [H]
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MPPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPRLTAAERDIGMASGRSTQAAA LPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSKREARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGA QQRVSILDQQAAAIARLAPLLQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNETADSGMRVTLSVPIPIFDRNE GGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYDEVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSA LTDASLRELDALVNFHTALATIEGLIGRPVNLSKGKTK
Sequences:
>Translated_438_residues MPPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPRLTAAERDIGMASGRSTQAAA LPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSKREARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGA QQRVSILDQQAAAIARLAPLLQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNETADSGMRVTLSVPIPIFDRNE GGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYDEVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSA LTDASLRELDALVNFHTALATIEGLIGRPVNLSKGKTK >Mature_437_residues PPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPRLTAAERDIGMASGRSTQAAAL PNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSKREARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGAQ QRVSILDQQAAAIARLAPLLQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGNL FKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNETADSGMRVTLSVPIPIFDRNEG GIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYDEVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSAL TDASLRELDALVNFHTALATIEGLIGRPVNLSKGKTK
Specific function: CzcC protein appears to modify the specificity of the system, perhaps by acting on the CzcB protein. When the CzcC protein is added to CzcA and CzcB, the efflux system gains specificity for cadmium and cobalt [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI87082199, Length=399, Percent_Identity=22.3057644110276, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 46098; Mature: 45967
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPR CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCC LTAAERDIGMASGRSTQAAALPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSK CCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC REARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGAQQRVSILDQQAAAIARLAPL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNET EEEECCCCHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHCCCCEEEECCHHHHCCC ADSGMRVTLSVPIPIFDRNEGGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYD CCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSALTDASLRELDALVNFHTALA HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIEGLIGRPVNLSKGKTK HHHHHHCCCCCCCCCCCC >Mature Secondary Structure PPRALARALVAALVLLPASPTLAESARPQSTRPAAARSSAERPLALTSAMASALAANPR CHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCC LTAAERDIGMASGRSTQAAALPNPALSLEVDNAMGSGSYQGLDLAEQTLQISQLVELGSK CCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC REARMAAAGAGVTVARWEREATRLQVLAETTAAFSAVLGAQQRVSILDQQAAAIARLAPL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQTRVDAGASSPAEISRARVAADFAKVELDRAKASLGTARRDLAVLMGMNEARFGRATGN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC LFKVSAPPALPSLIKQAQGNPQLTRFTAVQGQRRAELRAAQAKAVPDVTLGVGYRHYNET EEEECCCCHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHCCCCEEEECCHHHHCCC ADSGMRVTLSVPIPIFDRNEGGIYEAQESLRRAEAEEAIARGALIAQLGRAHDTLKAAYD CCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVSLLRTSTIPGARSAFEGVERGYGEGRYTLLELLDAQSALTDASLRELDALVNFHTALA HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIEGLIGRPVNLSKGKTK HHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2678100; 7766206 [H]