Click here to switch to the map view.

The map label for this gene is ycjP [H]

Identifier: 154244455

GI number: 154244455

Start: 552477

End: 553136

Strand: Reverse

Name: ycjP [H]

Synonym: Xaut_0498

Alternate gene names: 154244455

Gene position: 553136-552477 (Counterclockwise)

Preceding gene: 154244456

Following gene: 154244454

Centisome position: 10.42

GC content: 61.67

Gene sequence:

>660_bases
ATGGCCCAAGACGGATTACGGACGTGCGGTATTCAACCCGCGGATAAGAGCTTGATCAACCGTCGTCTCAAGGCCCATCC
CGTCCCCGTGCTGCCCATCAAAGTGATGACCAAACCCGTGCTGCAGGCTCGGGGCGAAGCCGTTCATCTGTGCCTCTTGA
CCACAGTCATAAGAGTGCCGCCCTCCATCCTGTTCATCCCGCTCGCCATCATGGTGTTCGGGCTCGGCATCTACGACACC
AAGCTCGCCCTCATCCTCACCTACCCCACCTTCCTGGTGCCGTTCTCCACCTGGCTGCTGATGGGCTATTTCCGCTCCAT
CCCGTTCGAGCTGGAGGAATGCGCGCTGGTGGACGGCGCCTCGCGCTGGCAGATCCTCATCAAGGTGCTGCTGCCGCTGT
CGGTGCCGGGGCTGATCTCGGCGGGCATCTTCTCGTTCACCCTGTCGTGGAACGAGTTCATCTACGCGCTCACCTTCATC
CAGTCGTCGGAGAACAAGACCGTGCCGGTGGGCGTGCTCACCGAGCTGGTGCGCTCGGACGTGTATGAGTGGGGCTCGCT
GATGGCCGGCGCGCTGCTGGGCTCGCTGCCGGTGGTGATCCTCTACTCCTTCTTCGTGGATTACTACGTGTCGTCCATGA
CCGGAGCGGTGAAGGAATAG

Upstream 100 bases:

>100_bases
ATGTGACGGGCAGCACGGCGACGGGATGCGGCCACGGTGGGGAACTCCCGCTGTGCACTATGTGGCTGAGCTTTGGCTCA
ATGCCCGCCTCTAGACAGGG

Downstream 100 bases:

>100_bases
GCCTCCCCGCCCAGGCGGGATTTTCCCAAGCGGGCAAAGCTTCCCCTGCGAAGCTTTGCCCGCTTGCCCTTCGGCCGCGA
CCGTGGCACCCCTTTGCGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MAQDGLRTCGIQPADKSLINRRLKAHPVPVLPIKVMTKPVLQARGEAVHLCLLTTVIRVPPSILFIPLAIMVFGLGIYDT
KLALILTYPTFLVPFSTWLLMGYFRSIPFELEECALVDGASRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIYALTFI
QSSENKTVPVGVLTELVRSDVYEWGSLMAGALLGSLPVVILYSFFVDYYVSSMTGAVKE

Sequences:

>Translated_219_residues
MAQDGLRTCGIQPADKSLINRRLKAHPVPVLPIKVMTKPVLQARGEAVHLCLLTTVIRVPPSILFIPLAIMVFGLGIYDT
KLALILTYPTFLVPFSTWLLMGYFRSIPFELEECALVDGASRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIYALTFI
QSSENKTVPVGVLTELVRSDVYEWGSLMAGALLGSLPVVILYSFFVDYYVSSMTGAVKE
>Mature_218_residues
AQDGLRTCGIQPADKSLINRRLKAHPVPVLPIKVMTKPVLQARGEAVHLCLLTTVIRVPPSILFIPLAIMVFGLGIYDTK
LALILTYPTFLVPFSTWLLMGYFRSIPFELEECALVDGASRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIYALTFIQ
SSENKTVPVGVLTELVRSDVYEWGSLMAGALLGSLPVVILYSFFVDYYVSSMTGAVKE

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=179, Percent_Identity=38.5474860335196, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1790464, Length=127, Percent_Identity=34.6456692913386, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24200; Mature: 24069

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDGLRTCGIQPADKSLINRRLKAHPVPVLPIKVMTKPVLQARGEAVHLCLLTTVIRVP
CCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PSILFIPLAIMVFGLGIYDTKLALILTYPTFLVPFSTWLLMGYFRSIPFELEECALVDGA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
SRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIYALTFIQSSENKTVPVGVLTELVRSD
HHHHHHHHHHHHCCCCHHHHHHHHHEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
VYEWGSLMAGALLGSLPVVILYSFFVDYYVSSMTGAVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQDGLRTCGIQPADKSLINRRLKAHPVPVLPIKVMTKPVLQARGEAVHLCLLTTVIRVP
CCCCCHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PSILFIPLAIMVFGLGIYDTKLALILTYPTFLVPFSTWLLMGYFRSIPFELEECALVDGA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
SRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIYALTFIQSSENKTVPVGVLTELVRSD
HHHHHHHHHHHHCCCCHHHHHHHHHEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
VYEWGSLMAGALLGSLPVVILYSFFVDYYVSSMTGAVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]