Click here to switch to the map view.

The map label for this gene is rsmB [H]

Identifier: 154244404

GI number: 154244404

Start: 489689

End: 490990

Strand: Reverse

Name: rsmB [H]

Synonym: Xaut_0447

Alternate gene names: 154244404

Gene position: 490990-489689 (Counterclockwise)

Preceding gene: 154244405

Following gene: 154244403

Centisome position: 9.25

GC content: 72.81

Gene sequence:

>1302_bases
ATGATCCCCGCCGCCCGTATCTCCGCCGCCATCGAGGTCCTCACCGACCTCACCACCCGCCGCCGGCCCGCCGCCGATGC
CCTGAAGGACTGGGGCCTCTCCCACCGCTTCGCCGGCTCCGGCGACCGCGCCGCCATCGCCGGCATCGTCTACGACACCC
TGCGCCGGCGCGCCTCCGCCGCCCATGTCATGGGCTCCGAGGAGCCGCGCGCGCTGGTGCTGGGCATGCTGGTGCTCATG
CGGGGACTGGATGGCGAGGCCATCGCGGCACTGGCGGACGGCTCCCGCTTCGCGCCGGCGCCCCTGACCGAGGACGAGCG
CGCCCGCCTCGCCGACCCGAGCATCAAGGGCGCGCCGCCCTTCGTCCGCGGCGACTATCCCCAGTGGCTCCACGCCTCCC
TGCGCCACGTCTTCGGCGAGGACGTGGTGGCGGAAGGCGCTGCGCTCGCCACCCGCGCGCCGCTGGACCTGCGCGTCAAC
ACCCTGAAGGGCGAGCCGGAGGCGGTGCGCGCCGAGCTGTCCCATCTCAACCCGGCGCCGGGCCGCTTCTCGCCTCTCGC
CCTGCGCATCCTGCTGGATTCCGAGGGCAAGGCCCCGCCGGTCTCCGCCGAGCCCGCCTTCCTGCGGGGCGAGGTGGAGG
TGCAGGACGAGGGCTCGCAGATCGCCGCCATCCTCGCCCGCCCGGTGCCCGGATCCCAGGTGCTGGACCTGTGCGCGGGT
GCTGGCGGCAAGACGCTGGAATTTGCCGCCCTCATGGACAACAAGGGCCAGCTTTACGCCCACGACAGCGACATCCGCCG
CCTGAAACCCATGCACGAGCGCCTCGCCCGCGCCGGCGTGCGCAACGTGCAGGTGAGGAGTCCGCGCGGCGCCGAGGACG
TGCTCCACGACCTTGAAGGCCGCATGGATCTCGTTCTGGTGGACGCCCCCTGCACCGGCACCGGCACCTGGCGCCGCAAT
CCCGACGCCAAATGGCGGGTGCGCCCCGGTGCACTCGCCCAGCGCACCGCCGAGCAGGCCAAGATCCTGGAAGAAGCCGC
CCATTATGTGCGCCCCGGCGGGCGGCTCGCCTATGTCACCTGCTCCCTGCTGGACGAGGAGAACGGAGCGCAGGTGCGCG
CGCTGCTCTCCAAGCGGGAGGATTTCCACGTGGTGCCGCCCAACGAGACTGTTCTGTCCCTCGGCGCGCACGGGCAGGCC
CTTGCGGACGCCGCCCTCACCAGCCGCGAGGGCATCCTGATGACCCCCCGCCGGACGGGGACGGACGGCTTCTTCGTCAG
CGTGATGAAGCGGGCGGGGTGA

Upstream 100 bases:

>100_bases
GTGATCGACGAGAAGCTGGGCACAGCCCTCGACCTCTTCGCCCGGCAGCTGGAGGCGGAAGGTCTTCAGCCCGCCGCCGC
GCGCCCCTGACGGATAGACC

Downstream 100 bases:

>100_bases
GGCGGGTTCAGATGTCCGGCGGAGGCGCGCCATGCCGAGCTACAGCGAAGACTGGAACCCGTTTCCCAAGCTGACGCCGA
AATTCCAGTTGAAGGTAACG

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MIPAARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAGSGDRAAIAGIVYDTLRRRASAAHVMGSEEPRALVLGMLVLM
RGLDGEAIAALADGSRFAPAPLTEDERARLADPSIKGAPPFVRGDYPQWLHASLRHVFGEDVVAEGAALATRAPLDLRVN
TLKGEPEAVRAELSHLNPAPGRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQDEGSQIAAILARPVPGSQVLDLCAG
AGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLARAGVRNVQVRSPRGAEDVLHDLEGRMDLVLVDAPCTGTGTWRRN
PDAKWRVRPGALAQRTAEQAKILEEAAHYVRPGGRLAYVTCSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGAHGQA
LADAALTSREGILMTPRRTGTDGFFVSVMKRAG

Sequences:

>Translated_433_residues
MIPAARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAGSGDRAAIAGIVYDTLRRRASAAHVMGSEEPRALVLGMLVLM
RGLDGEAIAALADGSRFAPAPLTEDERARLADPSIKGAPPFVRGDYPQWLHASLRHVFGEDVVAEGAALATRAPLDLRVN
TLKGEPEAVRAELSHLNPAPGRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQDEGSQIAAILARPVPGSQVLDLCAG
AGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLARAGVRNVQVRSPRGAEDVLHDLEGRMDLVLVDAPCTGTGTWRRN
PDAKWRVRPGALAQRTAEQAKILEEAAHYVRPGGRLAYVTCSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGAHGQA
LADAALTSREGILMTPRRTGTDGFFVSVMKRAG
>Mature_433_residues
MIPAARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAGSGDRAAIAGIVYDTLRRRASAAHVMGSEEPRALVLGMLVLM
RGLDGEAIAALADGSRFAPAPLTEDERARLADPSIKGAPPFVRGDYPQWLHASLRHVFGEDVVAEGAALATRAPLDLRVN
TLKGEPEAVRAELSHLNPAPGRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQDEGSQIAAILARPVPGSQVLDLCAG
AGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLARAGVRNVQVRSPRGAEDVLHDLEGRMDLVLVDAPCTGTGTWRRN
PDAKWRVRPGALAQRTAEQAKILEEAAHYVRPGGRLAYVTCSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGAHGQA
LADAALTSREGILMTPRRTGTDGFFVSVMKRAG

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=292, Percent_Identity=30.8219178082192, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI76150623, Length=292, Percent_Identity=30.8219178082192, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI32698918, Length=221, Percent_Identity=29.4117647058824, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI23199998, Length=249, Percent_Identity=31.7269076305221, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI270288818, Length=249, Percent_Identity=31.7269076305221, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI8922322, Length=249, Percent_Identity=31.7269076305221, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI270288816, Length=249, Percent_Identity=31.7269076305221, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI301336155, Length=287, Percent_Identity=27.8745644599303, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI39995082, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI2367212, Length=262, Percent_Identity=33.587786259542, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081985, Length=300, Percent_Identity=30.3333333333333, Blast_Score=106, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17536757, Length=292, Percent_Identity=31.8493150684932, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115534021, Length=231, Percent_Identity=30.3030303030303, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71998419, Length=231, Percent_Identity=30.3030303030303, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25143471, Length=179, Percent_Identity=32.4022346368715, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324268, Length=297, Percent_Identity=29.96632996633, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319447, Length=274, Percent_Identity=27.7372262773723, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI22024126, Length=294, Percent_Identity=30.2721088435374, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21356579, Length=225, Percent_Identity=27.5555555555556, Blast_Score=76, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24668781, Length=179, Percent_Identity=27.9329608938547, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356513, Length=168, Percent_Identity=27.9761904761905, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355201, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 46493; Mature: 46493

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAGSGDRAAIAGIVYDTLRRRASA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AHVMGSEEPRALVLGMLVLMRGLDGEAIAALADGSRFAPAPLTEDERARLADPSIKGAPP
HHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCC
FVRGDYPQWLHASLRHVFGEDVVAEGAALATRAPLDLRVNTLKGEPEAVRAELSHLNPAP
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCC
GRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQDEGSQIAAILARPVPGSQVLDLCAG
CCCCCEEEEEEECCCCCCCCCCCCCCEEECEEEEECCCCEEEEEEECCCCCHHHHHHHHC
AGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLARAGVRNVQVRSPRGAEDVLHDLEG
CCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCC
RMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAQRTAEQAKILEEAAHYVRPGGRLAYVT
CEEEEEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
CSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGAHGQALADAALTSREGILMTPRRTG
EEECCCCCCHHHHHHHHCCCCEEEECCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCC
TDGFFVSVMKRAG
CCHHHHHHHHHCC
>Mature Secondary Structure
MIPAARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAGSGDRAAIAGIVYDTLRRRASA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AHVMGSEEPRALVLGMLVLMRGLDGEAIAALADGSRFAPAPLTEDERARLADPSIKGAPP
HHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCC
FVRGDYPQWLHASLRHVFGEDVVAEGAALATRAPLDLRVNTLKGEPEAVRAELSHLNPAP
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCC
GRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQDEGSQIAAILARPVPGSQVLDLCAG
CCCCCEEEEEEECCCCCCCCCCCCCCEEECEEEEECCCCEEEEEEECCCCCHHHHHHHHC
AGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLARAGVRNVQVRSPRGAEDVLHDLEG
CCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCC
RMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAQRTAEQAKILEEAAHYVRPGGRLAYVT
CEEEEEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
CSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGAHGQALADAALTSREGILMTPRRTG
EEECCCCCCHHHHHHHHCCCCEEEECCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCC
TDGFFVSVMKRAG
CCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]