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The map label for this gene is intZ [H]

Identifier: 154244401

GI number: 154244401

Start: 485602

End: 486987

Strand: Reverse

Name: intZ [H]

Synonym: Xaut_0444

Alternate gene names: 154244401

Gene position: 486987-485602 (Counterclockwise)

Preceding gene: 154244402

Following gene: 154244398

Centisome position: 9.17

GC content: 63.42

Gene sequence:

>1386_bases
ATGGTATCCGTTCGCCCCTCGACCGGATGCGGATTTATGAGCGAACTCACTGATAAAGAACTGAAAAATCTCAAGCCGAG
GGCCAAGCTCTACAAGGTGACGGACCGCGACGGGATGTATGCGGCCGTCACCCCGACCGGGGTCGTCTCGTTCCGCTATC
AGTACCGGGTGAACGGGCGGCAGGAGGTCTTGACCATCGGCCGATATAGCGCCGAGGCGGCGCGCAAGCTGACACGGGCG
CCCGACGCGCTGGAATACGGCATGGAGGTGTCGCTTGCGGAGGCAAGGTCCCTGCTGGCACGCGCCCGACGTCAGGTCGA
GCGGGGCGAGTCGCCGTCGAAAGCCAAAGTGGAGAAGCGCACCGCGTCAGCCGAGGCTTTGACGTTCGGCGGGTGGGCGG
AAGCCTATTTCAAGCACAAGGCCGATCCCAAGTCCGGAGCTGAGAGACTGGCCGACAGCACTCTGGCCATGCGCCGGTCC
GTCTATGATCGCGCCATTGCGGGAGAGTTGTCGAAGCTCAAGCTGGGGGAAGTGACGCCGCAGCGCCTCAAACATCTGTG
CGACGAGGTCAAGGAGAAGCGCGGGCCGGCCGTCGCCGTGCATGTTCGCGAAGTCGTGTTGCTGGTGTTCCGTCATGCTC
AGGGAAGCGGGCTAGACGTGAGCAATCCGGCCGAGTCGATCCGCACCAGCGCCATCGCCACCTTTGAGCCGCGCGAGCGC
GCCCTTTCGCCCTCCGAGGTCCGCGCGGTCCTGGCGGCCCTAGATCATGTATCGGCCGCACCCACGCTACGCTTGGCGGT
GAAGTTTGTCCTGCTGACCGGCGTCCGGAAATCCGAGTTCATCGACGCCACGTGGAAGGAAATCGACTTCGCCGCCGCAC
GCTGGGCGATCCCGGCCGAGCGCATGAAGGCCGGCAAGGCACATGTGGTCCCGCTGAGCGATCAGGCTCTCGACATTCTG
ACGGTGTTCCGCACCATGTTCGGCACCAGCCGATACCTGCACCCCGGCCGATACGACAGCGATACGCCGATCAGCAATGC
CACCCTCAACCGCGTGATCGACACGGTGGTGGAGCGCATTCGCGAGACTGACCCGGATTTTCAGAGCTTCGGCGTTCACG
ATCTCCGCCGCACATTCTCGACCGGCCTGAACCGCGCCAAATTCGATGATCGCTGGATCGAGATGAGCCTGGCCCACGCG
CCCCGGAACCGGATCGCCGCCGTCTATAACGTGAACCGCTATCTCGCCGAGCGGAGGATCATGCTTCAGTGCTGGGCTGA
CATGCTCGACGCCTGGGTAGACGGGCGATCCGCGAAGGATCTGATCGCCGACGCAAAACAGCGCGCCGCCGAGGTTCACG
ATGACGAATTGGATGATGATCTCTAA

Upstream 100 bases:

>100_bases
TCACTGCGTTTCACCCCCGCCGGACCACTTTGTTGGTACCGATGTTGGTATAGCGCAGGATGGTCGAGAAACGGGCTTCC
GGTACCAACAGCGCCTGTTG

Downstream 100 bases:

>100_bases
GTGATGCTTCCCCGTCCATTCTGTCAGTCATTGGTGGCCCGCCATCGGGGCGGATCAGCAACCCATCGGTTGATATCGGA
TTCCCGCCAGCCGGCACCGT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MVSVRPSTGCGFMSELTDKELKNLKPRAKLYKVTDRDGMYAAVTPTGVVSFRYQYRVNGRQEVLTIGRYSAEAARKLTRA
PDALEYGMEVSLAEARSLLARARRQVERGESPSKAKVEKRTASAEALTFGGWAEAYFKHKADPKSGAERLADSTLAMRRS
VYDRAIAGELSKLKLGEVTPQRLKHLCDEVKEKRGPAVAVHVREVVLLVFRHAQGSGLDVSNPAESIRTSAIATFEPRER
ALSPSEVRAVLAALDHVSAAPTLRLAVKFVLLTGVRKSEFIDATWKEIDFAAARWAIPAERMKAGKAHVVPLSDQALDIL
TVFRTMFGTSRYLHPGRYDSDTPISNATLNRVIDTVVERIRETDPDFQSFGVHDLRRTFSTGLNRAKFDDRWIEMSLAHA
PRNRIAAVYNVNRYLAERRIMLQCWADMLDAWVDGRSAKDLIADAKQRAAEVHDDELDDDL

Sequences:

>Translated_461_residues
MVSVRPSTGCGFMSELTDKELKNLKPRAKLYKVTDRDGMYAAVTPTGVVSFRYQYRVNGRQEVLTIGRYSAEAARKLTRA
PDALEYGMEVSLAEARSLLARARRQVERGESPSKAKVEKRTASAEALTFGGWAEAYFKHKADPKSGAERLADSTLAMRRS
VYDRAIAGELSKLKLGEVTPQRLKHLCDEVKEKRGPAVAVHVREVVLLVFRHAQGSGLDVSNPAESIRTSAIATFEPRER
ALSPSEVRAVLAALDHVSAAPTLRLAVKFVLLTGVRKSEFIDATWKEIDFAAARWAIPAERMKAGKAHVVPLSDQALDIL
TVFRTMFGTSRYLHPGRYDSDTPISNATLNRVIDTVVERIRETDPDFQSFGVHDLRRTFSTGLNRAKFDDRWIEMSLAHA
PRNRIAAVYNVNRYLAERRIMLQCWADMLDAWVDGRSAKDLIADAKQRAAEVHDDELDDDL
>Mature_461_residues
MVSVRPSTGCGFMSELTDKELKNLKPRAKLYKVTDRDGMYAAVTPTGVVSFRYQYRVNGRQEVLTIGRYSAEAARKLTRA
PDALEYGMEVSLAEARSLLARARRQVERGESPSKAKVEKRTASAEALTFGGWAEAYFKHKADPKSGAERLADSTLAMRRS
VYDRAIAGELSKLKLGEVTPQRLKHLCDEVKEKRGPAVAVHVREVVLLVFRHAQGSGLDVSNPAESIRTSAIATFEPRER
ALSPSEVRAVLAALDHVSAAPTLRLAVKFVLLTGVRKSEFIDATWKEIDFAAARWAIPAERMKAGKAHVVPLSDQALDIL
TVFRTMFGTSRYLHPGRYDSDTPISNATLNRVIDTVVERIRETDPDFQSFGVHDLRRTFSTGLNRAKFDDRWIEMSLAHA
PRNRIAAVYNVNRYLAERRIMLQCWADMLDAWVDGRSAKDLIADAKQRAAEVHDDELDDDL

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=438, Percent_Identity=29.9086757990868, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1788690, Length=419, Percent_Identity=27.6849642004773, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788974, Length=424, Percent_Identity=27.8301886792453, Blast_Score=138, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 51543; Mature: 51543

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVRPSTGCGFMSELTDKELKNLKPRAKLYKVTDRDGMYAAVTPTGVVSFRYQYRVNGR
CCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEECCCCEEEEEEEEEECCC
QEVLTIGRYSAEAARKLTRAPDALEYGMEVSLAEARSLLARARRQVERGESPSKAKVEKR
HHEEEHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
TASAEALTFGGWAEAYFKHKADPKSGAERLADSTLAMRRSVYDRAIAGELSKLKLGEVTP
HCCCCCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
QRLKHLCDEVKEKRGPAVAVHVREVVLLVFRHAQGSGLDVSNPAESIRTSAIATFEPRER
HHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEECCHHH
ALSPSEVRAVLAALDHVSAAPTLRLAVKFVLLTGVRKSEFIDATWKEIDFAAARWAIPAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH
RMKAGKAHVVPLSDQALDILTVFRTMFGTSRYLHPGRYDSDTPISNATLNRVIDTVVERI
HHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RETDPDFQSFGVHDLRRTFSTGLNRAKFDDRWIEMSLAHAPRNRIAAVYNVNRYLAERRI
HCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHH
MLQCWADMLDAWVDGRSAKDLIADAKQRAAEVHDDELDDDL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVSVRPSTGCGFMSELTDKELKNLKPRAKLYKVTDRDGMYAAVTPTGVVSFRYQYRVNGR
CCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEECCCCCEEEECCCCEEEEEEEEEECCC
QEVLTIGRYSAEAARKLTRAPDALEYGMEVSLAEARSLLARARRQVERGESPSKAKVEKR
HHEEEHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
TASAEALTFGGWAEAYFKHKADPKSGAERLADSTLAMRRSVYDRAIAGELSKLKLGEVTP
HCCCCCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
QRLKHLCDEVKEKRGPAVAVHVREVVLLVFRHAQGSGLDVSNPAESIRTSAIATFEPRER
HHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEECCHHH
ALSPSEVRAVLAALDHVSAAPTLRLAVKFVLLTGVRKSEFIDATWKEIDFAAARWAIPAE
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH
RMKAGKAHVVPLSDQALDILTVFRTMFGTSRYLHPGRYDSDTPISNATLNRVIDTVVERI
HHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RETDPDFQSFGVHDLRRTFSTGLNRAKFDDRWIEMSLAHAPRNRIAAVYNVNRYLAERRI
HCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHH
MLQCWADMLDAWVDGRSAKDLIADAKQRAAEVHDDELDDDL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]