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The map label for this gene is fimB [H]

Identifier: 153950454

GI number: 153950454

Start: 1952010

End: 1952813

Strand: Direct

Name: fimB [H]

Synonym: YpsIP31758_1679

Alternate gene names: 153950454

Gene position: 1952010-1952813 (Clockwise)

Preceding gene: 153949087

Following gene: 153948835

Centisome position: 41.33

GC content: 47.64

Gene sequence:

>804_bases
ATGAAAACGTTATGGCTAATCCTCAGGCCGCGTGCCCGTAAGGTGAATAATCTGCGTACTTTACTGATTACGGCTATTTT
AAGCAGTTTGGTGTTGAGTGCTACGGTTCAAGCCGGTGTGGCGATTGGTCTGACACGGGTGATAGTGACCGGTGCTGATA
AATCCGGCAGTGTGCAGATCCTCAATGACGGCCTTCATCCAGCGTTGCTGCAACTCTGGGTGGATAATAATATCGCTGAA
ATGGATAAGCCCATTGAGCAGATAAACGTCCCGTTTGTGGTTGATAGCCCGGTATTCCGCCTTAACGCCAAGACCAATAA
ATCTATCCGTATTTATTATACCGGAGGCGCTAATCAGTTGCCGTCTGACCGTGAATCTATGTTTTGGCTTAATGTGTTAG
AAGTGCCGCCCAAAGCGTCTGCAAATCAATCATCACAAAATGCGGTACAAATCGCTTTTCGCTCACGTATTAAATTATTT
TACCGCCCGGCAGGCATACCGATCAGTTCAGAAGGTGTAGCAACTAAGTTGTCTTTCACTCTGGTACCTAAAGGGGAGGG
CCGTGTATTACGCGTGGCTAATCCGACGCCATTCAATGTCACATTCCAGACATTGGCTATCGCCCAAAGTCATACCGCGC
AGGGCGTCACTATCAAACTGGGCGCTGATGATATGGTGGGGCCAAAAAGCAGCGTGGACAGTGCTCCAGTGAGCAACAAC
GTACTGGCGAAGAATATGAGTGTGTTTTTCTCAATTATTGATGATTTTGGCTCACCCATTGAAGGGCAGCAGCCACTACA
ATAA

Upstream 100 bases:

>100_bases
AAAGTTACACGGTCCCCATGCAGGCGGGAATTTACCAAATAGAAAACACCGTGACACCTGGTTCAGTAAAAGGTGAGTTC
ACATTTACGTTGATCTATAA

Downstream 100 bases:

>100_bases
ATCAGTGATCGTCTTGCCGGGGGGAAGCCAATATTCAGGCTTCCCCCAAGAGCCTAATGACTTTTTTGTGTTACACGTAA
GAGACTCACCAGTGCCGCGA

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQILNDGLHPALLQLWVDNNIAE
MDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQLPSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLF
YRPAGIPISSEGVATKLSFTLVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVSNN
VLAKNMSVFFSIIDDFGSPIEGQQPLQ

Sequences:

>Translated_267_residues
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQILNDGLHPALLQLWVDNNIAE
MDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQLPSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLF
YRPAGIPISSEGVATKLSFTLVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVSNN
VLAKNMSVFFSIIDDFGSPIEGQQPLQ
>Mature_267_residues
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQILNDGLHPALLQLWVDNNIAE
MDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQLPSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLF
YRPAGIPISSEGVATKLSFTLVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVSNN
VLAKNMSVFFSIIDDFGSPIEGQQPLQ

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=252, Percent_Identity=35.7142857142857, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1788428, Length=163, Percent_Identity=38.6503067484663, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789532, Length=190, Percent_Identity=32.6315789473684, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790771, Length=196, Percent_Identity=33.6734693877551, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786743, Length=240, Percent_Identity=30.4166666666667, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786936, Length=232, Percent_Identity=29.3103448275862, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788677, Length=218, Percent_Identity=32.5688073394495, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082203, Length=245, Percent_Identity=26.9387755102041, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787171, Length=241, Percent_Identity=29.4605809128631, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081806, Length=186, Percent_Identity=30.1075268817204, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28917; Mature: 28917

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEE
LNDGLHPALLQLWVDNNIAEMDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQL
EECCCCHHHEEEEECCCHHHHCCCHHHCCCCEEECCCEEEEECCCCCEEEEEECCCCCCC
PSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLFYRPAGIPISSEGVATKLSFT
CCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEEHHCEEEEECCCCCEECCCCCEEEEEEE
LVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVSNN
EEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
VLAKNMSVFFSIIDDFGSPIEGQQPLQ
CHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKTLWLILRPRARKVNNLRTLLITAILSSLVLSATVQAGVAIGLTRVIVTGADKSGSVQI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEE
LNDGLHPALLQLWVDNNIAEMDKPIEQINVPFVVDSPVFRLNAKTNKSIRIYYTGGANQL
EECCCCHHHEEEEECCCHHHHCCCHHHCCCCEEECCCEEEEECCCCCEEEEEECCCCCCC
PSDRESMFWLNVLEVPPKASANQSSQNAVQIAFRSRIKLFYRPAGIPISSEGVATKLSFT
CCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEEHHCEEEEECCCCCEECCCCCEEEEEEE
LVPKGEGRVLRVANPTPFNVTFQTLAIAQSHTAQGVTIKLGADDMVGPKSSVDSAPVSNN
EEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
VLAKNMSVFFSIIDDFGSPIEGQQPLQ
CHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]