Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
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Accession | NC_009708 |
Length | 4,723,306 |
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The map label for this gene is yjeS [H]
Identifier: 153946901
GI number: 153946901
Start: 4125224
End: 4126459
Strand: Direct
Name: yjeS [H]
Synonym: YpsIP31758_3660
Alternate gene names: 153946901
Gene position: 4125224-4126459 (Clockwise)
Preceding gene: 153949742
Following gene: 153947749
Centisome position: 87.34
GC content: 51.13
Gene sequence:
>1236_bases ATGGCACACCCCCTCGATCTGAATCAATTAGCCCAACATATCAAGCAATGGGGGCAATCGCTAGGTTTCCAGCAAGTCGG TATTTGCGATACCGATTTGACGGCGGAAGAACCGCGTTTACAAGCCTGGCTTGATAAACAATATCATGGCGAAATGGCGT GGATGGCACGCCACGGTATGCTGCGTGCGCGGCCCCATGAGTTATTGCCGGGGACCTTGCGGGTGATCAGCGTAAGGATG AATTATCTGCCCGCCAAGGCAGCATTTGCCAGTACATTAAATAACCCAGAATTGGGTTATGTCAGCCGCTATGCTCTGGG TCGTGATTATCATAAATTGCTGCGCCAGCGCCTGAAAAAATTGGGCGATCAGATTCAACACTATTGTTTGGAACAAAATA ATTTAGATCGCCATGACTTAGAGCTCCATGACTTAGAACAACATGACTCAGAACGACAAGGCCAGCCGGAACAGCATACT GCCAGTGAAATTAACTTTCGTCCCTTTGTGGACTCCGCGCCGATAATGGAGCGGTCACTGGCGGCTAAAGCAGGGATTGG CTGGGTTGGTAAGCACTCACTGATATTAAACCGCGATGCCGGTTCTTGGTTCTTCCTTGGCGAGCTACTGATTGACCTGC CTTTGCCGGTTGATAAACCGCAGGAAGAGCAGTGTGGGCGCTGTGTAGCCTGTATGACCACCTGCCCGACAGGGGCGATT GTCGCCCCCTACACCGTTGATGCCCGCCGCTGTATCTCTTACCTGACGATTGAACTGGAAGGCGCAATACCTGAAGAGTT CCGCCCACTCATGGGTAACCGGATTTATGGTTGCGATGACTGTCAGCTCATTTGTCCCTGGAATCGCTTCTCGCAATTAA CCGATGAAGACGATTTTAGTCCACGAGCTGTATTGCACACTCCACAGTTGCTGGATCTGTTTGCCTGGAACGAAGAGAAA TTTTTGCGAGTCACGGAGGGGTCTGCCATACGGCGTATTGGCCATCTACGTTGGTTACGTAACATATCGGTAGCACTCGG CAATGCGCCTTATCTTGATAGTATCGTATTGGCGTTGGAAACACGTCGGGGGCTGCACCCTATGCTGGATGAGCATATTG AATGGGCGATATCACAGCAATTAGCACGGCGGGCTACCCAGGCGGTAGAGGTTCAACTGCCACAGAAAAAACGGTTGATT CGTGCCATTGAAAAGGGTCTACCACGGGATGCCTGA
Upstream 100 bases:
>100_bases GAAGTGGGCCGCCGCCGCTGCTTCATTCTGACGTACCCAGTCCGCAGAAAAAACAGAGTGTGGTAAACTGACTCTGGTTT GTTTCTTACTATGGTCTGTC
Downstream 100 bases:
>100_bases TATCTTTTTATTCAGCATTTTTTTGATGAATAAGATAAGGAATTTACTGTGCATAAAAATAAAAATGCCTTGGCAATCAA GTGCAAAAAAAAGCACAAGT
Product: iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MAHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGMLRARPHELLPGTLRVISVRM NYLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKKLGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHT ASEINFRPFVDSAPIMERSLAAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAI VAPYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFSPRAVLHTPQLLDLFAWNEEK FLRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALETRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLI RAIEKGLPRDA
Sequences:
>Translated_411_residues MAHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGMLRARPHELLPGTLRVISVRM NYLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKKLGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHT ASEINFRPFVDSAPIMERSLAAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAI VAPYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFSPRAVLHTPQLLDLFAWNEEK FLRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALETRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLI RAIEKGLPRDA >Mature_410_residues AHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGMLRARPHELLPGTLRVISVRMN YLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKKLGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHTA SEINFRPFVDSAPIMERSLAAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAIV APYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFSPRAVLHTPQLLDLFAWNEEKF LRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALETRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLIR AIEKGLPRDA
Specific function: Unknown
COG id: COG1600
COG function: function code C; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790608, Length=411, Percent_Identity=74.6958637469586, Blast_Score=641, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004453 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013542 - InterPro: IPR009051 [H]
Pfam domain/function: PF08331 DUF1730 [H]
EC number: NA
Molecular weight: Translated: 46964; Mature: 46833
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGM CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCC LRARPHELLPGTLRVISVRMNYLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKK CCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHH LGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHTASEINFRPFVDSAPIMERSL HHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHH AAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAI HHHCCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCCCCCCCHHHHCCEEHHHHHCCCCCE VAPYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFS ECCCCCCHHHHHHEEEEEECCCCCHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCC PRAVLHTPQLLDLFAWNEEKFLRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALE CCEEECCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLIRAIEKGLPRDA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCC >Mature Secondary Structure AHPLDLNQLAQHIKQWGQSLGFQQVGICDTDLTAEEPRLQAWLDKQYHGEMAWMARHGM CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCC LRARPHELLPGTLRVISVRMNYLPAKAAFASTLNNPELGYVSRYALGRDYHKLLRQRLKK CCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHH LGDQIQHYCLEQNNLDRHDLELHDLEQHDSERQGQPEQHTASEINFRPFVDSAPIMERSL HHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHH AAKAGIGWVGKHSLILNRDAGSWFFLGELLIDLPLPVDKPQEEQCGRCVACMTTCPTGAI HHHCCCCCCCCCEEEEECCCCCCEEHHHHHHHCCCCCCCCCHHHHCCEEHHHHHCCCCCE VAPYTVDARRCISYLTIELEGAIPEEFRPLMGNRIYGCDDCQLICPWNRFSQLTDEDDFS ECCCCCCHHHHHHEEEEEECCCCCHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCC PRAVLHTPQLLDLFAWNEEKFLRVTEGSAIRRIGHLRWLRNISVALGNAPYLDSIVLALE CCEEECCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TRRGLHPMLDEHIEWAISQQLARRATQAVEVQLPQKKRLIRAIEKGLPRDA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]