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The map label for this gene is sodF [H]

Identifier: 153937653

GI number: 153937653

Start: 2333489

End: 2334085

Strand: Reverse

Name: sodF [H]

Synonym: CLC_2204

Alternate gene names: 153937653

Gene position: 2334085-2333489 (Counterclockwise)

Preceding gene: 153937151

Following gene: 153935640

Centisome position: 62.07

GC content: 30.15

Gene sequence:

>597_bases
ATGGCACATACTTTACCAAATTTAAATTATGATTACAATGCATTAGAACCTCATTATGATGAGCAGACTTTGAAAATACA
TCATGATATTCATCATAAAGCTTATGTAGATGGATTGAATAAAGCGGAACAAAAGCTTCAAGAAGCTAGAGAATCAGGAG
ATTTTGCATTAATAAAGCATTGGGAAAAGGAAATAGCATTTCATGGGTCAGGTCACATTTTACATACATTATTTTGGGAA
AATATGGCCCCTAATGGAAATCTAAATCCTGAGGGATCTGCAATTGAAAGAATAAAACAAGATTTTGGAGATTATGAAAA
ATTTAAAAAACAATTTACAGAAGCTGCTATAGCAGTAGAAGGTTCAGGCTGGACTATTTTAGCATGGAATCCTATGTTTC
AAAAATTAGTAATATTGCAGGTAGAAAAACATCAAAATTTAACTCAATGGGGAGTAGTTCCACTATTAATTTTAGATTTA
TGGGAACATGCATATTATTTAAAATATCAAAATAGAAGGGCAGAGTTTATTAATGCTTGGTGGAATATTGTAAATTGGGA
TATAGTAAATACTAGATATGATAATGCTATAAAATAA

Upstream 100 bases:

>100_bases
TGTGATTTTATGCATACAAATATCATGAATATTTATTTAACAGTAATTAATACTAAGTAAGGATAGACAAAATAAAAAAA
ATAAAAAGGAGATATTTAAA

Downstream 100 bases:

>100_bases
ATAATGTATTATTTAATTAAAAACACAATAAAAAATTTATTGTTTATTAAGTTCTTTATTCAGACTGTTCAAAAACCCCA
TGTAAATACATGGGGCTTTA

Product: Mn/Fe superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKHWEKEIAFHGSGHILHTLFWE
NMAPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVEGSGWTILAWNPMFQKLVILQVEKHQNLTQWGVVPLLILDL
WEHAYYLKYQNRRAEFINAWWNIVNWDIVNTRYDNAIK

Sequences:

>Translated_198_residues
MAHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKHWEKEIAFHGSGHILHTLFWE
NMAPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVEGSGWTILAWNPMFQKLVILQVEKHQNLTQWGVVPLLILDL
WEHAYYLKYQNRRAEFINAWWNIVNWDIVNTRYDNAIK
>Mature_197_residues
AHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKHWEKEIAFHGSGHILHTLFWEN
MAPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVEGSGWTILAWNPMFQKLVILQVEKHQNLTQWGVVPLLILDLW
EHAYYLKYQNRRAEFINAWWNIVNWDIVNTRYDNAIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=192, Percent_Identity=45.3125, Blast_Score=188, Evalue=3e-48,
Organism=Homo sapiens, GI67782305, Length=192, Percent_Identity=45.3125, Blast_Score=188, Evalue=3e-48,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=37.5, Blast_Score=136, Evalue=1e-32,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=36.8932038834951, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787946, Length=190, Percent_Identity=36.3157894736842, Blast_Score=121, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17506561, Length=195, Percent_Identity=39.4871794871795, Blast_Score=159, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=39.4871794871795, Blast_Score=154, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=37.6237623762376, Blast_Score=135, Evalue=3e-33,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=40.1015228426396, Blast_Score=162, Evalue=1e-40,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23337; Mature: 23205

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKH
CCCCCCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
WEKEIAFHGSGHILHTLFWENMAPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVE
HHHHHEECCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHEEEE
GSGWTILAWNPMFQKLVILQVEKHQNLTQWGVVPLLILDLWEHAYYLKYQNRRAEFINAW
CCCEEEEEECHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHH
WNIVNWDIVNTRYDNAIK
HHHHCEEEECCCCCCCCC
>Mature Secondary Structure 
AHTLPNLNYDYNALEPHYDEQTLKIHHDIHHKAYVDGLNKAEQKLQEARESGDFALIKH
CCCCCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
WEKEIAFHGSGHILHTLFWENMAPNGNLNPEGSAIERIKQDFGDYEKFKKQFTEAAIAVE
HHHHHEECCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHEEEE
GSGWTILAWNPMFQKLVILQVEKHQNLTQWGVVPLLILDLWEHAYYLKYQNRRAEFINAW
CCCEEEEEECHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHH
WNIVNWDIVNTRYDNAIK
HHHHCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]