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The map label for this gene is deoC

Identifier: 153937183

GI number: 153937183

Start: 1665263

End: 1665901

Strand: Direct

Name: deoC

Synonym: CLC_1594

Alternate gene names: 153937183

Gene position: 1665263-1665901 (Clockwise)

Preceding gene: 153935838

Following gene: 153936999

Centisome position: 44.28

GC content: 31.92

Gene sequence:

>639_bases
ATGAAATTATCTAAATATATTGATCACACACTATTAAAGCCACAAGCAACAGAAAAAGATATTCTAAAACTTATTGAAGA
AGCTAAAACTTATGATTTTGCATCAGTTTGTGTAAATCCTAGCTGGGTTAAGCTTGCATATGAAAATTTAAAAGATACAG
ATGTTAAGGTTTGTACTGTTGTAGGATTCCCACTTGGAGCAACTTCAACTGCTTCTAAAGTGTATGAAACAAAAGTTGCC
ATTAAAGATGGTGCAGATGAAATAGATATGGTTATTTCTGTTGGACAACTTAAATCAGGGAATGATGAATATGTAAAAGA
AGAAATCAAAAAAATTGTAGAAGCATCAAAGAATAAATTAGTTAAAGTAATTATAGAAACATGCTTATTAACAGAAGAAG
AAAAAGTAAAAGCATGTACTTTATCTAAAGAAGCAGGGGCAGATTATGTGAAAACTTCAACAGGATTTTCAACTGGCGGA
GCAAAACCAGAAGATATTAAATTAATGAGAGAAACAGTTGGTAAAGATATGGGTGTTAAAGCTTCTGGAGGAATTCATAC
TAGAGAAGAAATGGAAGTCATGATTGAAAATGGTGCCACAAGAATCGGTGCAAGCTGTGGAGTAGAACTTGTAAAATAA

Upstream 100 bases:

>100_bases
TCTAATAAGTGCTATTATGAGGATACAAAGAAGCATAAAATAATAAAAGTAAAAAATAATTAATGTTTAATAATAAACAA
AGTGAGAGGGGTTATAAATT

Downstream 100 bases:

>100_bases
ACATAATATTATAGATTGTTAATTTGTTTTTTATAACAGATTAGCAATCTATAGGATAAAAAATTAAAGTTATATTTTAT
ATAATTACATATCAGTTTAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTVVGFPLGATSTASKVYETKVA
IKDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKLVKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGG
AKPEDIKLMRETVGKDMGVKASGGIHTREEMEVMIENGATRIGASCGVELVK

Sequences:

>Translated_212_residues
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTVVGFPLGATSTASKVYETKVA
IKDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKLVKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGG
AKPEDIKLMRETVGKDMGVKASGGIHTREEMEVMIENGATRIGASCGVELVK
>Mature_212_residues
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTVVGFPLGATSTASKVYETKVA
IKDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKLVKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGG
AKPEDIKLMRETVGKDMGVKASGGIHTREEMEVMIENGATRIGASCGVELVK

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=214, Percent_Identity=31.7757009345794, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1790841, Length=206, Percent_Identity=34.4660194174757, Blast_Score=101, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17533015, Length=209, Percent_Identity=32.0574162679426, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_CLOB1 (A7FU73)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001383906.1
- ProteinModelPortal:   A7FU73
- SMR:   A7FU73
- STRING:   A7FU73
- GeneID:   5395000
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_1583
- eggNOG:   COG0274
- HOGENOM:   HBG636421
- OMA:   CLEAREN
- ProtClustDB:   PRK00507
- BioCyc:   CBOT441770:CLB_1583-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 23060; Mature: 23060

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: ACT_SITE 151-151 ACT_SITE 180-180

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTV
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCEEEEEE
VGFPLGATSTASKVYETKVAIKDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKL
EECCCCCCHHHHHHHHHHEEECCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGGAKPEDIKLMRETVGKDMGVK
HHHHHHHHHCCCCHHHHHHCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
ASGGIHTREEMEVMIENGATRIGASCGVELVK
CCCCCCCHHHHHHHHHCCCCEECCCCCCEECC
>Mature Secondary Structure
MKLSKYIDHTLLKPQATEKDILKLIEEAKTYDFASVCVNPSWVKLAYENLKDTDVKVCTV
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCCEEEEEE
VGFPLGATSTASKVYETKVAIKDGADEIDMVISVGQLKSGNDEYVKEEIKKIVEASKNKL
EECCCCCCHHHHHHHHHHEEECCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VKVIIETCLLTEEEKVKACTLSKEAGADYVKTSTGFSTGGAKPEDIKLMRETVGKDMGVK
HHHHHHHHHCCCCHHHHHHCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
ASGGIHTREEMEVMIENGATRIGASCGVELVK
CCCCCCCHHHHHHHHHCCCCEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA